Table 1 List of 52 CIPK genes identified in soybean and their sequence characteristics.
Name | Gene ID (phytozome) | Chromosomal localization | Gene length (bp) | Amino acid length (aa) | PI | MW (kD) | Exons | CDS length (bp) |
|---|---|---|---|---|---|---|---|---|
GmCIPK1 | Glyma.01g131500 | Gm01: 44789012–44792912 | 3901 | 467 | 8.69 | 52.85 | 1 | 1404 |
GmCIPK2 | Glyma.02g202900 | Gm02: 38802831–38805349 | 2519 | 430 | 9.10 | 48.36 | 1 | 1293 |
GmCIPK3 | Glyma.02g217300 | Gm02: 40416767–40423408 | 6642 | 444 | 6.11 | 50.45 | 14 | 1335 |
GmCIPK4 | Glyma.02g234800 | Gm02: 42228835–42231757 | 2923 | 463 | 8.85 | 52.87 | 1 | 1392 |
GmCIPK5 | Glyma.02g235100 | Gm02: 42255452–42257724 | 2273 | 442 | 7.12 | 49.25 | 1 | 1329 |
GmCIPK6 | Glyma.02g275900 | Gm02: 45882082–45889538 | 7457 | 472 | 8.06 | 53.77 | 13 | 1419 |
GmCIPK7 | Glyma.03g036900 | Gm03: 4497651–4498973 | 1323 | 413 | 8.63 | 46.46 | 3 | 1242 |
GmCIPK8 | Glyma.03g260200 | Gm03: 45407900–45415032 | 7133 | 440 | 8.45 | 49.93 | 12 | 1323 |
GmCIPK9 | Glyma.04g061500 | Gm04: 5015260- 5017719 | 2460 | 434 | 8.96 | 48.78 | 2 | 1305 |
GmCIPK10 | Glyma.04g090500 | Gm04: 7961747–7967803 | 6057 | 446 | 6.65 | 50.80 | 14 | 1341 |
GmCIPK11 | Glyma.05g158700 | Gm05: 35076361–35078476 | 2116 | 517 | 7.23 | 58.42 | 1 | 1554 |
GmCIPK12 | Glyma.06g062100 | Gm06: 4677276–4680311 | 3036 | 453 | 8.51 | 50.60 | 1 | 1362 |
GmCIPK13 | Glyma.06g092300 | Gm06: 7283361–7289264 | 5904 | 446 | 7.16 | 50.81 | 14 | 1341 |
GmCIPK14 | Glyma.07g023500 | Gm07: 1804676–1807191 | 2516 | 441 | 9.07 | 50.46 | 1 | 1326 |
GmCIPK15 | Glyma.07g051000 | Gm07: 4401020–4408559 | 7540 | 438 | 8.89 | 49.91 | 14 | 1317 |
GmCIPK16 | Glyma.08g116500 | Gm08: 8961418–8963555 | 2138 | 528 | 7.24 | 59.71 | 1 | 1587 |
GmCIPK17 | Glyma.08g218400 | Gm08: 17747795–17750917 | 3123 | 430 | 9.25 | 48.77 | 1 | 1293 |
GmCIPK18 | Glyma.08g252100 | Gm08: 22112310–22118088 | 5779 | 467 | 9.00 | 53.63 | 10 | 1404 |
GmCIPK19 | Glyma.09g079400 | Gm09: 8955776–8963586 | 7811 | 448 | 6.26 | 50.53 | 12 | 1347 |
GmCIPK20 | Glyma.09g089700 | Gm09: 11977305–11986209 | 8905 | 462 | 8.94 | 51.70 | 15 | 1389 |
GmCIPK21 | Glyma.09g098000 | Gm09: 16564068–16566202 | 2135 | 440 | 9.28 | 49.65 | 1 | 1323 |
GmCIPK22 | Glyma.09g276600 | Gm09: 49206095–49207881 | 1787 | 438 | 6.15 | 48.82 | 1 | 1317 |
GmCIPK23 | Glyma.09g277000 | Gm09: 49243593–49247135 | 3543 | 460 | 8.52 | 52.36 | 1 | 1383 |
GmCIPK24 | Glyma.10g001700 | Gm10: 165788–167599 | 1812 | 431 | 8.90 | 48.12 | 1 | 1296 |
GmCIPK25 | Glyma.10g179600 | Gm10: 41288232–41290368 | 2137 | 437 | 9.10 | 48.53 | 1 | 1314 |
GmCIPK26 | Glyma.11g161300 | Gm11: 14868303–14871145 | 2843 | 462 | 8.77 | 52.46 | 1 | 1389 |
GmCIPK27 | Glyma.11g235300 | Gm11: 33029240–33033627 | 4388 | 452 | 8.73 | 50.88 | 1 | 1359 |
GmCIPK28 | Glyma.13g069500 | Gm13: 16957654–16960090 | 2437 | 456 | 6.53 | 46.88 | 2 | 1371 |
GmCIPK29 | Glyma.13g119500 | Gm13: 23212628–23212628 | 5830 | 446 | 8.45 | 50.08 | 12 | 1341 |
GmCIPK30 | Glyma.13g166100 | Gm13: 28076313–28083963 | 7651 | 446 | 9.01 | 50.82 | 14 | 1341 |
GmCIPK31 | Glyma.13g228400 | Gm13: 34069476–34071724 | 2249 | 512 | 6.70 | 57.53 | 1 | 1539 |
GmCIPK32 | Glyma.13g228500 | Gm13: 34080809–34082788 | 1980 | 451 | 9.20 | 51.53 | 1 | 1356 |
GmCIPK33 | Glyma.13g370000 | Gm13: 45542607–45543980 | 1374 | 425 | 8.87 | 47.35 | 2 | 1278 |
GmCIPK34 | Glyma.14g040200 | Gm14: 3012174–3018140 | 5967 | 462 | 7.65 | 53.00 | 15 | 1389 |
GmCIPK35 | Glyma.14g203000 | Gm14: 46787303–46790554 | 3252 | 439 | 7.52 | 48.63 | 1 | 1320 |
GmCIPK36 | Glyma.15g003400 | Gm15: 309074–311683 | 2610 | 461 | 9.05 | 51.77 | 1 | 1386 |
GmCIPK37 | Glyma.15g084000 | Gm15: 6435171–6436213 | 1043 | 306 | 8.74 | 35.14 | 2 | 921 |
GmCIPK38 | Glyma.15g084100 | Gm15: 6445126–6447384 | 2259 | 510 | 6.75 | 57.27 | 1 | 1533 |
GmCIPK39 | Glyma.15g187400 | Gm15: 19503493–19511425 | 7933 | 437 | 7.58 | 49.17 | 12 | 1314 |
GmCIPK40 | Glyma.15g203700 | Gm15: 26165280–26167502 | 2223 | 438 | 9.31 | 49.51 | 1 | 1317 |
GmCIPK41 | Glyma.16g020200 | Gm16: 1828561–1835982 | 7422 | 438 | 9.05 | 49.86 | 14 | 1317 |
GmCIPK42 | Glyma.17g040700 | Gm17: 3002793–3008282 | 5490 | 448 | 8.75 | 50.39 | 12 | 1347 |
GmCIPK43 | Glyma.17g066300 | Gm17: 5105100–5109101 | 4002 | 467 | 8.82 | 52.82 | 15 | 1404 |
GmCIPK44 | Glyma.17g074800 | Gm17: 5871870–5874213 | 2344 | 422 | 9.17 | 47.60 | 1 | 1269 |
GmCIPK45 | Glyma.17g113700 | Gm17: 8997933–9005687 | 7755 | 446 | 9.06 | 50.83 | 14 | 1341 |
GmCIPK46 | Glyma.18g021600 | Gm18: 1584996–1589570 | 4575 | 449 | 8.99 | 50.31 | 1 | 1350 |
GmCIPK47 | Glyma.18g054600 | Gm18: 4749616–4752421 | 2806 | 450 | 6.18 | 50.12 | 2 | 1353 |
GmCIPK48 | Glyma.18g055000 | Gm18: 4773932–4777530 | 3599 | 462 | 8.80 | 52.40 | 1 | 1389 |
GmCIPK49 | Glyma.18g212200 | Gm18: 49872222–49875889 | 3668 | 462 | 8.85 | 52.65 | 1 | 1389 |
GmCIPK50 | Glyma.18g212700 | Gm18: 49942123–49944169 | 2047 | 443 | 6.41 | 49.71 | 1 | 1332 |
GmCIPK51 | Glyma.19g111300 | Gm19: 36555752–36557117 | 1366 | 426 | 7.99 | 48.84 | 3 | 1281 |
GmCIPK52 | Glyma.20g210800 | Gm20: 44730135–43731825 | 1691 | 436 | 9.22 | 48.62 | 1 | 1311 |
