Table 1 Length (nt), A + T content (%), number of variants (V), abundance (% of the genome), divergence (%), number of contigs found in the draft genome of Locusta migratoria11, maximum number of repeats per contig (MNRPC), chromosome location (in the Southern lineage) and clustering pattern of all 62 satDNA families and superfamilies (SF).
From: High-throughput analysis of the satellitome illuminates satellite DNA evolution
SF | SatDNA Family | Length | A + T | V | Abundance | Divergence | L. migratoria genome (NL)11 | Chromosome location (SL) | Pattern | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SL | NL | SL | NL | Contigs | MNRPC | L1 | L2 | X | M3 | M4 | M5 | M6 | M7 | M8 | S9 | S10 | S11 | ||||||
1 | LmiSat01–193 | 193 | 59.59 | 5 | 0.98225 | 0.6903 | 4.67 | 5.07 | 332 | 15 | p | p | p | p | p | p | p | p | p | p | p | p | c |
LmiSat02–176 | 176 | 53.41 | 1 | 0.47509 | 0.9996 | 5.32 | 5.38 | 12931 | 100 | p | p | p | p | p | p | c | |||||||
LmiSat03–195 | 195 | 58.97 | 6 | 0.29481 | 0.2305 | 5.42 | 5.96 | 1003 | 206 | p | p | c | |||||||||||
LmiSat04–18 | 18 | 50 | 2 | 0.06194 | 0.0816 | 7.2 | 7.23 | 108 | 156 | i,d | i | c | |||||||||||
LmiSat05–400 | 400 | 51.25 | 1 | 0.05431 | 0.0483 | 4.65 | 5.04 | 91 | 3 | i,d | p | c | |||||||||||
LmiSat06–185 | 185 | 59.46 | 4 | 0.0541 | 0.07 | 4.76 | 5.28 | 274 | 42 | p | p | p | p | p | c | ||||||||
LmiSat07–5-tel | 5 | 60 | 1 | 0.04438 | 0.1611 | 1.75 | 6.12 | 57 | 2868 | t | t | t | t | t | t | t | t | t | t | t | t | c | |
LmiSat08–168 | 168 | 57.74 | 1 | 0.03737 | 0.0467 | 4.96 | 4.91 | 327 | 28 | p | m | ||||||||||||
LmiSat09–181 | 181 | 60.22 | 5 | 0.02944 | 0.0072 | 5.38 | 7.42 | 45 | 60 | p | c | ||||||||||||
LmiSat10–9 | 9 | 55.56 | 2 | 0.02269 | 0.029 | 11.79 | 11.42 | 267 | 243 | p | p | c | |||||||||||
LmiSat11–37 | 37 | 62.16 | 7 | 0.01873 | 0.0069 | 7.75 | 8.12 | 317 | 106 | p | c | ||||||||||||
2 | LmiSat12–273 | 273 | 56.41 | 3 | 0.01836 | 0.0113 | 3.5 | 5.29 | 23 | 16 | d | c | |||||||||||
1 | LmiSat13–259 | 259 | 57.53 | 5 | 0.01697 | 0.0115 | 4.38 | 6.25 | 137 | 27 | p | c | |||||||||||
LmiSat14–216 | 216 | 51.85 | 4 | 0.01426 | 0.0091 | 5.39 | 8.79 | 70 | 40 | i,i | i | c | |||||||||||
LmiSat15–190 | 190 | 55.26 | 1 | 0.01426 | 0.0166 | 4.09 | 4.5 | 212 | 9 | p | c | ||||||||||||
2 | LmiSat16–278 | 278 | 62.59 | 1 | 0.0139 | 0.0082 | 2.49 | 3.01 | 17 | 9 | d | c | |||||||||||
LmiSat17–75 | 75 | 57.33 | 1 | 0.01177 | 0.0033 | 5.79 | 6.66 | 112 | 7 | p | c | ||||||||||||
LmiSat18–210 | 210 | 60.48 | 1 | 0.01121 | 0.0267 | 6.33 | 4.59 | 6 | 2 | p | c | ||||||||||||
LmiSat19–89 | 89 | 60.67 | 1 | 0.01058 | 0.0034 | 3.82 | 6.44 | 10 | 4 | p | c | ||||||||||||
LmiSat20–15 | 15 | 53.33 | 1 | 0.01032 | 0.0201 | 12.71 | 14.15 | 190 | 256 | nc | |||||||||||||
LmiSat21–38 | 38 | 50 | 1 | 0.01013 | 0.0019 | 2.85 | 2.91 | 7 | 20 | i,d | m | ||||||||||||
LmiSat22–17 | 17 | 58.82 | 1 | 0.01 | 0.0092 | 10.81 | 10.28 | 182 | 426 | i | c | ||||||||||||
LmiSat23–223 | 223 | 61.43 | 1 | 0.00927 | 0.0106 | 4.42 | 5.73 | 18 | 10 | d | d | i | c | ||||||||||
3 | LmiSat24–266 | 266 | 56.39 | 1 | 0.00895 | 0.0066 | 2.06 | 5.14 | 51 | 4 | nc | ||||||||||||
LmiSat25–219 | 219 | 39.73 | 2 | 0.00834 | 0.0105 | 5.88 | 8.2 | 21 | 5 | d | c | ||||||||||||
4 | LmiSat26–240 | 240 | 66.2 | 2 | 0.00809 | 0.00436 | 7.44 | 9.25 | 33 | 8 | i | c | |||||||||||
LmiSat27–57 | 57 | 47.37 | 1 | 0.0079 | 0.0103 | 8.99 | 9.66 | 333 | 326 | nc | |||||||||||||
3 | LmiSat28–263 | 263 | 57.41 | 2 | 0.00768 | 0.0139 | 1.79 | 2.22 | 91 | 12 | i,i | c | |||||||||||
LmiSat29–68 | 68 | 58.82 | 1 | 0.00719 | 0.0019 | 9.36 | 14.48 | 46 | 89 | p | c | ||||||||||||
LmiSat30–138 | 138 | 40.58 | 1 | 0.0068 | 0.0055 | 5.74 | 9.03 | 8 | 2 | p | c | ||||||||||||
5 | LmiSat31–8 | 8 | 50 | 3 | 0.00668 | 3.86 | 23 | 83 | p | p | c | ||||||||||||
LmiSat32–261 | 261 | 51.72 | 1 | 0.00631 | 0.0056 | 5.98 | 9.18 | 37 | 12 | d | c | ||||||||||||
LmiSat33–21 | 21 | 47.62 | 1 | 0.00627 | 0.0039 | 7.77 | 8.35 | 30 | 179 | i | c | ||||||||||||
LmiSat34–299 | 299 | 61.87 | 1 | 0.00622 | 0.0048 | 6.81 | 7.39 | 406 | 3 | p | c | ||||||||||||
LmiSat35–228 | 228 | 55.7 | 1 | 0.00597 | 0.0053 | 2.43 | 4.64 | 25 | 18 | nc | |||||||||||||
LmiSat36–15 | 15 | 60 | 2 | 0.00585 | 0.0093 | 16.88 | 15.12 | 279 | 302 | nc | |||||||||||||
4 | LmiSat37–238 | 238 | 66 | 1 | 0.00544 | 0.00224 | 6.53 | 6.52 | 111 | 37 | i | p | c | ||||||||||
LmiSat38–42 | 42 | 64.29 | 1 | 0.00511 | 0.0046 | 14.56 | 14.94 | 106 | 692 | i | c | ||||||||||||
LmiSat39–53 | 53 | 32.08 | 1 | 0.00503 | 0.0013 | 6.79 | 9.17 | 14 | 119 | i | c | ||||||||||||
LmiSat40–148 | 148 | 67.57 | 1 | 0.00459 | 0.0023 | 2.35 | 3.05 | 20 | 4 | d | c | ||||||||||||
LmiSat41–180 | 180 | 61.67 | 1 | 0.00455 | 0.0058 | 3.38 | 2.14 | 4 | 6 | i | c | ||||||||||||
LmiSat42–127 | 127 | 51.18 | 1 | 0.00447 | 0.0012 | 2.02 | 4.6 | 2 | 2 | p | c | ||||||||||||
3 | LmiSat43–231 | 231 | 53.68 | 1 | 0.0044 | 0.68 | 44 | 3 | i | m | |||||||||||||
LmiSat44–17 | 17 | 29.41 | 1 | 0.00428 | 0.0005 | 11.45 | 11.3 | 7 | 53 | i | c | ||||||||||||
3 | LmiSat45–274 | 274 | 54.01 | 1 | 0.0042 | 0.0066 | 8.2 | 7.22 | 152 | 12 | p,i | p | p | c | |||||||||
LmiSat46–353 | 353 | 59.77 | 1 | 0.00407 | 0.0071 | 15.49 | 11.38 | 1799 | 2 | ||||||||||||||
LmiSat47–41 | 41 | 41.46 | 1 | 0.00369 | 0.0058 | 12.46 | 13.22 | 48 | 394 | p | c | ||||||||||||
LmiSat48–220 | 220 | 58.18 | 1 | 0.00366 | 0.0011 | 3.8 | 7.74 | 18 | 3 | nc | |||||||||||||
LmiSat49–47 | 47 | 42.55 | 1 | 0.00362 | 0.0113 | 6.24 | 6.7 | 127 | 282 | p | c | ||||||||||||
5 | LmiSat50–16 | 16 | 56.25 | 2 | 0.00331 | 0.0169 | 8.31 | 8.24 | 54 | 64 | i | c | |||||||||||
4 | LmiSat51–241 | 241 | 63.9 | 1 | 0.00294 | 0.0058 | 7.32 | 3.97 | 33 | 138 | i | c | |||||||||||
LmiSat52–143 | 143 | 51.75 | 1 | 0.00257 | 0.0076 | 22.15 | 14.01 | 1796 | 3 | ||||||||||||||
LmiSat53–47 | 47 | 40.43 | 1 | 0.00248 | 0.019 | 3.16 | 5.2 | 9 | 23 | i | c | ||||||||||||
3 | LmiSat54–272 | 272 | 56.25 | 1 | 0.00244 | 0.0051 | 4.55 | 4.15 | 164 | 51 | p | i | i | p | d | m | |||||||
LmiSat55–90 | 90 | 35.56 | 1 | 0.00164 | 0.0074 | 15.62 | 8.57 | 4 | 3 | nc | |||||||||||||
LmiSat56–19 | 19 | 52.63 | 4 | 0.00083 | 0.0067 | 5.09 | 4.31 | 15 | 97 | p | i | m | |||||||||||
LmiSat57–230 | 230 | 63.04 | 1 | 0.00052 | 0.0047 | 18.21 | 3.4 | 212 | 25 | ||||||||||||||
LmiSat58–86 | 86 | 41.86 | 1 | 0.00008 | 0.0127 | 5.99 | 3.12 | 10 | 4 | nc | |||||||||||||
5 | LmiSat59–16 | 16 | 43.75 | 3 | 0.00004 | 0.0049 | 18.23 | 14.54 | 13 | 13 | nc | ||||||||||||
LmiSat60–255 | 255 | 52.94 | 1 | 0.00004 | 0.0053 | 1.03 | 0.99 | 0 | 0 | nc | |||||||||||||
LmiSat61–63 | 63 | 42.86 | 1 | 0.00002 | 0.0062 | 14.99 | 4.6 | 1 | 11 | nc | |||||||||||||
LmiSat62–23 | 23 | 43.48 | 1 | 0.0045 | 4.57 | 1 | 9 | p | c | ||||||||||||||
Total | 107 | 2.39241 | 2.7417 | Total p | 3 | 4 | 5 | 8 | 3 | 3 | 2 | 6 | 4 | 5 | 3 | 6 | 52 | ||||||
Total i | 2 | 3 | 0 | 3 | 0 | 0 | 1 | 1 | 2 | 10 | 0 | 4 | 26 | ||||||||||
Total d | 0 | 5 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 4 | 0 | 0 | 11 | ||||||||||
Total loci | 5 | 12 | 5 | 11 | 3 | 3 | 4 | 7 | 7 | 19 | 3 | 10 | 89 | ||||||||||
satDNAs | 4 | 11 | 5 | 10 | 3 | 3 | 4 | 7 | 7 | 16 | 3 | 10 | 83 |