Table 1 Length (nt), A + T content (%), number of variants (V), abundance (% of the genome), divergence (%), number of contigs found in the draft genome of Locusta migratoria11, maximum number of repeats per contig (MNRPC), chromosome location (in the Southern lineage) and clustering pattern of all 62 satDNA families and superfamilies (SF).

From: High-throughput analysis of the satellitome illuminates satellite DNA evolution

SF

SatDNA Family

Length

A + T

V

Abundance

Divergence

L. migratoria genome (NL)11

Chromosome location (SL)

Pattern

SL

NL

SL

NL

Contigs

MNRPC

L1

L2

X

M3

M4

M5

M6

M7

M8

S9

S10

S11

1

LmiSat01–193

193

59.59

5

0.98225

0.6903

4.67

5.07

332

15

p

p

p

p

p

p

p

p

p

p

p

p

c

 

LmiSat02–176

176

53.41

1

0.47509

0.9996

5.32

5.38

12931

100

  

p

  

p

 

p

 

p

p

p

c

 

LmiSat03–195

195

58.97

6

0.29481

0.2305

5.42

5.96

1003

206

p

  

p

        

c

 

LmiSat04–18

18

50

2

0.06194

0.0816

7.2

7.23

108

156

         

i,d

 

i

c

 

LmiSat05–400

400

51.25

1

0.05431

0.0483

4.65

5.04

91

3

         

i,d

 

p

c

 

LmiSat06–185

185

59.46

4

0.0541

0.07

4.76

5.28

274

42

 

p

 

p

    

p

p

 

p

c

 

LmiSat07–5-tel

5

60

1

0.04438

0.1611

1.75

6.12

57

2868

t

t

t

t

t

t

t

t

t

t

t

t

c

 

LmiSat08–168

168

57.74

1

0.03737

0.0467

4.96

4.91

327

28

  

p

         

m

 

LmiSat09–181

181

60.22

5

0.02944

0.0072

5.38

7.42

45

60

        

p

   

c

 

LmiSat10–9

9

55.56

2

0.02269

0.029

11.79

11.42

267

243

         

p

 

p

c

 

LmiSat11–37

37

62.16

7

0.01873

0.0069

7.75

8.12

317

106

   

p

        

c

2

LmiSat12–273

273

56.41

3

0.01836

0.0113

3.5

5.29

23

16

 

d

          

c

1

LmiSat13–259

259

57.53

5

0.01697

0.0115

4.38

6.25

137

27

    

p

       

c

 

LmiSat14–216

216

51.85

4

0.01426

0.0091

5.39

8.79

70

40

   

i,i

       

i

c

 

LmiSat15–190

190

55.26

1

0.01426

0.0166

4.09

4.5

212

9

       

p

    

c

2

LmiSat16–278

278

62.59

1

0.0139

0.0082

2.49

3.01

17

9

 

d

          

c

 

LmiSat17–75

75

57.33

1

0.01177

0.0033

5.79

6.66

112

7

   

p

        

c

 

LmiSat18–210

210

60.48

1

0.01121

0.0267

6.33

4.59

6

2

       

p

    

c

 

LmiSat19–89

89

60.67

1

0.01058

0.0034

3.82

6.44

10

4

 

p

          

c

 

LmiSat20–15

15

53.33

1

0.01032

0.0201

12.71

14.15

190

256

            

nc

 

LmiSat21–38

38

50

1

0.01013

0.0019

2.85

2.91

7

20

         

i,d

  

m

 

LmiSat22–17

17

58.82

1

0.01

0.0092

10.81

10.28

182

426

       

i

    

c

 

LmiSat23–223

223

61.43

1

0.00927

0.0106

4.42

5.73

18

10

 

d

    

d

  

i

  

c

3

LmiSat24–266

266

56.39

1

0.00895

0.0066

2.06

5.14

51

4

            

nc

 

LmiSat25–219

219

39.73

2

0.00834

0.0105

5.88

8.2

21

5

 

d

          

c

4

LmiSat26–240

240

66.2

2

0.00809

0.00436

7.44

9.25

33

8

           

i

c

 

LmiSat27–57

57

47.37

1

0.0079

0.0103

8.99

9.66

333

326

            

nc

3

LmiSat28–263

263

57.41

2

0.00768

0.0139

1.79

2.22

91

12

 

i,i

          

c

 

LmiSat29–68

68

58.82

1

0.00719

0.0019

9.36

14.48

46

89

   

p

        

c

 

LmiSat30–138

138

40.58

1

0.0068

0.0055

5.74

9.03

8

2

        

p

   

c

5

LmiSat31–8

8

50

3

0.00668

 

3.86

 

23

83

         

p

p

 

c

 

LmiSat32–261

261

51.72

1

0.00631

0.0056

5.98

9.18

37

12

 

d

          

c

 

LmiSat33–21

21

47.62

1

0.00627

0.0039

7.77

8.35

30

179

         

i

  

c

 

LmiSat34–299

299

61.87

1

0.00622

0.0048

6.81

7.39

406

3

 

p

          

c

 

LmiSat35–228

228

55.7

1

0.00597

0.0053

2.43

4.64

25

18

            

nc

 

LmiSat36–15

15

60

2

0.00585

0.0093

16.88

15.12

279

302

            

nc

4

LmiSat37–238

238

66

1

0.00544

0.00224

6.53

6.52

111

37

i

          

p

c

 

LmiSat38–42

42

64.29

1

0.00511

0.0046

14.56

14.94

106

692

           

i

c

 

LmiSat39–53

53

32.08

1

0.00503

0.0013

6.79

9.17

14

119

         

i

  

c

 

LmiSat40–148

148

67.57

1

0.00459

0.0023

2.35

3.05

20

4

         

d

  

c

 

LmiSat41–180

180

61.67

1

0.00455

0.0058

3.38

2.14

4

6

        

i

   

c

 

LmiSat42–127

127

51.18

1

0.00447

0.0012

2.02

4.6

2

2

     

p

      

c

3

LmiSat43–231

231

53.68

1

0.0044

 

0.68

 

44

3

        

i

   

m

 

LmiSat44–17

17

29.41

1

0.00428

0.0005

11.45

11.3

7

53

         

i

  

c

3

LmiSat45–274

274

54.01

1

0.0042

0.0066

8.2

7.22

152

12

p,i

 

p

p

        

c

 

LmiSat46–353

353

59.77

1

0.00407

0.0071

15.49

11.38

1799

2

             
 

LmiSat47–41

41

41.46

1

0.00369

0.0058

12.46

13.22

48

394

    

p

       

c

 

LmiSat48–220

220

58.18

1

0.00366

0.0011

3.8

7.74

18

3

            

nc

 

LmiSat49–47

47

42.55

1

0.00362

0.0113

6.24

6.7

127

282

   

p

        

c

5

LmiSat50–16

16

56.25

2

0.00331

0.0169

8.31

8.24

54

64

         

i

  

c

4

LmiSat51–241

241

63.9

1

0.00294

0.0058

7.32

3.97

33

138

 

i

          

c

 

LmiSat52–143

143

51.75

1

0.00257

0.0076

22.15

14.01

1796

3

             
 

LmiSat53–47

47

40.43

1

0.00248

0.019

3.16

5.2

9

23

         

i

  

c

3

LmiSat54–272

272

56.25

1

0.00244

0.0051

4.55

4.15

164

51

  

p

i

  

i

p

d

   

m

 

LmiSat55–90

90

35.56

1

0.00164

0.0074

15.62

8.57

4

3

            

nc

 

LmiSat56–19

19

52.63

4

0.00083

0.0067

5.09

4.31

15

97

      

p

  

i

  

m

 

LmiSat57–230

230

63.04

1

0.00052

0.0047

18.21

3.4

212

25

             
 

LmiSat58–86

86

41.86

1

0.00008

0.0127

5.99

3.12

10

4

            

nc

5

LmiSat59–16

16

43.75

3

0.00004

0.0049

18.23

14.54

13

13

            

nc

 

LmiSat60–255

255

52.94

1

0.00004

0.0053

1.03

0.99

0

0

            

nc

 

LmiSat61–63

63

42.86

1

0.00002

0.0062

14.99

4.6

1

11

            

nc

 

LmiSat62–23

23

43.48

1

 

0.0045

 

4.57

1

9

       

p

    

c

 

Total

  

107

2.39241

2.7417

   

Total p

3

4

5

8

3

3

2

6

4

5

3

6

52

          

Total i

2

3

0

3

0

0

1

1

2

10

0

4

26

          

Total d

0

5

0

0

0

0

1

0

1

4

0

0

11

          

Total loci

5

12

5

11

3

3

4

7

7

19

3

10

89

          

satDNAs

4

11

5

10

3

3

4

7

7

16

3

10

83

  1. In each family, length and A + T content are given for the most abundant variant. Divergence per family is expressed as percentage of Kimura divergence. Chromosome location was analyzed by FISH in a Spanish population. SL = Southern lineage, NL = Northern lineage. Chromosome locations: t = telomeric, p = proximal to centromere, i = interstitial, d = distal. Chromosome distribution patterns: c = clustered, nc = non-clustered, m = mixed. When a satDNA showed two loci in a same chromosome, their locations were indicated separated by a comma. Totals at the bottom do not include LmiSat07–5 (the telomeric repeat).