Table 2 List of genes in the chloroplast genome of Ilex.

Transfer RNAs

trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG, trnK-UUU, trnL-UAA, trnM-CAU, trnQ-UUG, trnP-GGG, trnP-UGG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-UAC, trnW-CCA, trnY-GUA, trnA-UGC(×2), trnI-CAU(×2), trnI-GAU(×2), trnL-CAA(×2), trnL-UAG, trnN-GUU(×2), trnR-ACG(×2), trnV-GAC(×2)

Ribosomal RNAs

rrn16(×2), rrn23(×2), rrn4.5(×2), rrn5(×2)

Ribosomal protein small subunit

rps16, rps2, rps14, rps4, rps18, rps12(×2), rps11, rps8, rps3, rps19, rps7(×2), rps15

Ribosomal protein large subunit

rpl33, rpl20, rpl36, rpl14, rpl16, rpl22, rpl2(×2), rpl23(×2), rpl32

Subunits of RNA polymerase

rpoA, rpoB, rpoC1, rpoC2

photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbG, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, lhbA

Cythochrome b/f complex

petA, petB, petD, petG, petL petN

ATP synthase

atpA, atpB, atpE, atpF, atpH, atpI

NADH-dehydrogenase

ndhA, ndhB(×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Large subunit Rubisco

rbcL

Translation initiation factor

infA

Acetyl-CoA carboxylase

accD

Cytochrome c biogenesis

ccsA

Maturase

matK

ATP-dependent protease

clpP

Inner membrane protein

cemA

Pseudogene unknown function

Conserved hypothetical chloroplast ORF

ycf3, ycf4, ycf2(×2), ycf15(×2), ycf68(×2), orf42(×2), orf56(×2), ycf1(×2), orf188