Table 3 Repetitive sequences of Ilex pubescens calculated in REPuter.
Repeat length (bp) | Repeat bases | Repeat location | Copy of repeat location |
|---|---|---|---|
15 | TCTTTCTTTTTTTTT | trnH-GUG psbA spacer | clpP |
16 | TTTTTTTTTTTTTTTT | trnH-GUG psbA spacer | trnM-CAU atpE spacer |
16 | TTGAAAAAAAAAAAAA | atpA-atpF spacer | trnS-UGA lhbA spacer |
16 | TGAAAAAAAAAAAAAA | atpA-atpF spacer | rps18-rpl20 spacer |
16 | ATTTCTTTTTTAGTTT | atpH-atpI spacer | ycf1 |
16 | TTTTTTGAAAAAAAAA | rps2-rpoC2 spacer | ndhF-rpl32 spacer |
16 | GAAAAAAAAAAAAAGA | lhbA trnG-UCC spacer | rps18-rpl20 spacer |
16 | AAAAAAAAAAAAAGAA | lhbA trnG-UCC spacer | rpl14-rpl16 spacer |
16 | ATTATTAATTTGTATG | trnF-GAA ndhJ spacer | ycf1 |
16 | TAGTCACTTCTTTTTT | psaJ-rpl33 spacer | ycf2 |
16 | CTTTCTTTTTTTTTTC | clpP | infA-rps8 spacer |
16 | ATTTTTATTTTGTTTT | rpl16-rps3 spacer | rps19-rpl2 spacer |
17 | TTTTTTTTTTTTTTATT | trnH-GUG psbA spacer | psbE-petL spacer |
17 | CTTTTTTGAAAAAAAAA | atpA-atpF spacer | rps2-rpoC2 |
17 | TTTTTTGAAAAAAAAAA | atpA-atpF spacer | ndhF-rpl32 |
17 | TAGTAAAAATAAAAAGA | trnM-CAU psbD spacer | accD-psaI spacer |
17 | AAGACGAAAAAAAAAAA | trnT-UGU trnL-UAA spacer | petA-psbJ spacer |
17 | CTATATATTTTTCCAGT | cemA-petA spacer | petD |
17 | GCTTTTGTTTATAAAAA | rpl16-rps3 spacer | rpl16-rps3 spacer |
17 | GATATTGATGCTAGTGA | ycf2 | ycf2 |
18 | TCCACTCAGCCATCTCTC | trnS-GCU | trnS-UGA |
18 | CGAAAATTCTTTTTTCTC | trnE-UUC trnM-CAU spacer | rpl32 trnL-UAG spacer |
18 | ATTGTATCCATTGAGCAA | psaB | psaA |
18 | ATGCAATAGCTAAATGAT | psaB | psaA |
18 | CTTTTCTGAGTGAACTAG | accD | accD |
18 | AGAACTACGAGATCACCC | trnI-GAU | trnA-UGC |
19 | TGCGGGTTCGATTCCCGCT | trnG-GCC | trnG-UCC |
21 | ATGCTGCTGCAGAATAAACCA | trnH-GUG psbA spacer | rpl22 |
21 | AAGAGAGGGATTCGAACCCTC | trnS-GCU | trnS-UGA |
21 | AGACAGGATTTGAACCCGTGA | trnfM-CAU | trnP-UGG |
23 | TCATTGTTCCACTCTTTGACAAC | rrn4.5-rrn5 spacer | rrn4.5-rrn5 spacer |
26 | GTGAGATTTTCATCTCATACGGCTCC | ycf3 | ndhA |
26 | TTATTTATTTTATATTCTATTTCAAT | rps4 trnT-UGU spacer | rps4 trnT-UGU spacer |
29 | TCGATATTGATGATAGTGACGATATTGAT | ycf2 | ycf2 |
