Figure 2: False positive CNVRs caused by cattle genome assembly errors. | Scientific Reports

Figure 2: False positive CNVRs caused by cattle genome assembly errors.

From: Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations

Figure 2

(a) FST between male and female of Nellore cattle at CNV segment level; (b) FST between male and female of HapMap cattle at CNV segment level; (c) BAF and logR ratio distribution of SNP probes near FP_CNVR7. Five upstream and downstream probes were included to represent the basal level; (d) BAF and logR ratio distribution of SNP probes within FP_CNVR2; (e) Male-specific PCR validation results. Although there were nonspecific bands in some samples, specific amplifications of target bands (labeled) were only present in males.

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