Table 1 False positive CNVRs caused by genome assembly errors.
False positive CNVRs | UMD3.1Chr | Start | End | Btau_4.6.1Chr | Overlapped gene | Overlapped with QTLs |
|---|---|---|---|---|---|---|
FP_CNVR1 | chr1 | 83,218,713 | 83,238,102 | chrY | EPHB3 | Body weight (yearling) |
FP_CNVR2 | chr2 | 55,587,169 | 55,598,367 | chrUn | ||
FP_CNVR3 | chr4 | 45,054,839 | 45,072,215 | chrX | RELN | Stillbirth (direct), Calving ease (maternal) |
FP_CNVR4 | chr4 | 75,028,395 | 75,104,623 | chrUn | GTPBP10 | |
FP_CNVR5 | chr5 | 22,514,133 | 22,563,988 | chrY | Intramuscular fat, Shear force, Longissimus muscle area, Fat thickness at the 12th rib, Kidney fat weight, Carcass weight, Body weight (slaughter), Chest width, Length of productive life, Milk fat percentage, Milk fat yield (daughter deviation), Body condition score, Somatic cell score (DYD), Conformation score, Rump angle | |
FP_CNVR6 | chr17 | 15,448,739 | 15,477,125 | chrX | Marbling score | |
FP_CNVR7 | chr17 | 25,056,695 | 25,119,996 | chrY | PRAME | |
FP_CNVR8 | chr17 | 50,746,686 | 50,962,760 | chrY | Trans-16-C18:1 fatty acid content, Clinical mastitis (DYD), Shear force, Somatic cell score (DYD) | |
FP_CNVR9 | chr17 | 51,115,979 | 51,433,906 | chrY | ZNF280B, HFSY2, PRAME | Trans-16-C18:1 fatty acid content, Clinical mastitis (DYD), Shear force, Metabolic body weight, Dry matter intake, Abomasum displacement, Body weight (weaning) |
