Table 1 The average expression levels (TPM) in V. volvacea and the predicted function of the five newly selected ICGs.
Gene symbol | Mean TPM | Gene name | Pfam annotation | KOG annotation | Function |
|---|---|---|---|---|---|
L-asp | 6.30 | L-asparaginase | Asparaginase (PF00710) | Asparaginase; Amino acid transport and metabolism | Catalyze the hydrolysis of asparagine |
Ras | 7.88 | Ras protein | Ras family (PF00071) | Ras-related small GTPase; General function prediction only | Regulate signaling networks involved in actin organization, cell proliferation, differentiation, vesicular trafficking |
SPRYp | 61.76 | Endosomal SPRY domain protein | SPRY domain (PF00622) | SPRY domain-containing proteins; General function prediction only | Be involved in cargo recognition and nutrient transport as a component of the endosome-vacuole trafficking pathway |
Vps26 | 89.46 | Vacuolar protein sorting-associated protein 26 | Vacuolar protein sorting-associated protein 26 (PF03643) | Membrane coat complex Retromer, subunit VPS26; Intracellular trafficking, secretion and vesicular transport | Participate in protein trafficking to the vacuole and mediate cargo selection |
MSF1 | 156.28 | MSF1 domain containing protein | PRELI-like family (PF04707) | Member of the intra-mitochondrial sorting protein family; Intracellular trafficking, secretion and vesicular transport | Be involved in intra-mitochondrial protein sorting; maintain mitochondrial electron transport chain and respiratory competency |
