Table 1 Positive selection sites on capsid gene in human NoV GII.
From: Molecular evolution of the capsid gene in human norovirus genogroup II
Amino acid change | SLAC | FEL | IFEL | MEME |
|---|---|---|---|---|
Ser6Asn | ○ | ○ | ○ | ○ |
Asn6Ser, Lys, Ile | ||||
Asn9Thr, Ser | ○ | ○ | ||
Thr9Ala | ||||
Ala9Thr | ||||
Ser9Asn | ||||
Asn9Thr,Lys,Ser | ||||
Ala9Val, Thr | ||||
Thr16Ala, Ser | ○ | |||
Ala16Ser, Thr | ||||
Val23Ile, Ala | ○ | |||
Ile23Val, Ser, Ala | ||||
Ala23Gly | ||||
Asn25Ser, Thr, His, Gln, | ○ | |||
Mix | ||||
Ser25Asn | ||||
Glu64Mix, His | ○ | |||
Cys268Ser, Ala, Val | ○ | |||
Val268Cys, Ala | ||||
Ser268Thr | ||||
Asp297His, Asn, Ser, Gly, Val, Glu | ○ | |||
His297Pro, Gln, Asp | ||||
Pro297Ser | ||||
Gln297His | ||||
Asn297Ile, Ser | ||||
Gly297Ser, Pro, Arg, Ala | ||||
Ser297Asn, Ala | ||||
Gly298Asp, Arg, Ala, Ile, Gln, Asn, Lys | ○ | |||
Asp298Gly, Asn, Glu | ||||
Arg298Ser | ||||
Ala303Val, Ile, Thr | ○ | |||
Thr303Val | ||||
Asp359Ala | ○ | ○ | ||
Thr359Ser | ||||
Ala359Ser, Val | ||||
Ser359Asn, Gly | ||||
Pro359Thr | ||||
Ser359Asn | ||||
Ala360Thr, Ser | ○ | |||
Gly370Ala, Ser, Mix | ○ | |||
Ala370Ser, Gly | ||||
Ser379Thr, Asp, Ala, Gly, Asn, Pro | ○ | |||
Asp379Asn | ||||
Gly379Ser, Asp | ||||
Ala379Ser | ||||
Asn379Asp | ||||
Thr379Ser, Ala | ||||
Asn397Ser, Asp, Glu, Gly, Thr, Gln | ○ | |||
Ser397Arg, Asp | ||||
Gly397Ser, Asp, | ||||
Asp397Glu, Asn | ||||
His397Arg | ||||
Thr397Pro | ||||
Gln397Asp | ||||
Gly416Asp, Ala, Ser | ○ | |||
Asp416Gly, Ser, Asn, Glu | ||||
Glu416Asp | ||||
His416Asn, Gln, Arg | ||||
Asn416Arg, Thr, Asp | ||||
Thr416Pro, Ala | ||||
Ser416Thr | ||||
Asp416Asn, Gln, Gly, Ser, Glu, Ala | ○ | |||
Asn416Asp, Ser, Gly | ||||
Ser416Ala | ||||
Gly416Ser | ||||
Ala419Thr | ○ | ○ | ○ | ○ |
Thr419Asn, Ala | ||||
Asn419Asp, Ala | ||||
Asp419Gly | ||||
Thr419Ala | ||||
Asp419Pro | ||||
Arg435Thr, His | ○ | |||
Thr435Pro, Val | ||||
Pro435His, Ser | ||||
His435Ala, Arg, Gln | ||||
Ala435Arg, Ser, His, Val | ||||
Gln435Pro | ||||
Trp485Phe | ○ |
