Table 3 The annotation information of genes harboring the significant QTSs of plant height (PH) and heading date (HD).
QTS | Chr. | Allele | Trait | Gene ID | Gene Annotation |
|---|---|---|---|---|---|
rs24562025 | 1 | G/A | PH | LOC_Os01g43050 | CENP-C1, putative, expressed |
rs10179007 | 6 | C/G | PH | LOC_Os06g17550 | retrotransposon protein, putative, Ty3-gypsy subclass |
rs7478190 | 8 | G/T | PH | LOC_Os08g12640 | retrotransposon protein, putative, Ty3-gypsy subclass, expressed |
rs4468159 | 11 | C/T | PH | LOC_Os11g08460 | DnaK family protein, putative, expressed |
rs10809004 | 12 | C/A | PH | LOC_Os12g18700 | expressed protein |
rs489068 | 12 | C/T | PH | LOC_Os12g01810 | expressed protein |
rs12807091 | 1 | T/C | HD | LOC_Os01g22780 | GDSL-like lipase/acylhydrolase, putative, expressed |
rs22139712 | 1 | G/A | HD | LOC_Os01g39330 | helix-loop-helix DNA-binding domain containing protein, expressed |
rs26023433 | 1 | C/T | HD | LOC_Os01g45810 | transposon protein, putative, unclassified, expressed |
rs32347548 | 4 | T/C | HD | LOC_Os04g54340 | double-strand break repair protein MRE11, putative, expressed |
rs4139855 | 4 | T/C | HD | LOC_Os04g07784 | transposon protein, putative, unclassified, expressed |
rs3112796 | 6 | G/A | HD | LOC_Os06g06610 | expressed protein |
rs12634148 | 10 | C/T | HD | LOC_Os10g24620 | retrotransposon protein, putative, Ty3-gypsy subclass, expressed |
rs17909546 | 10 | A/G | HD | LOC_Os10g33790 | expressed protein |
rs457324 | 12 | C/T | HD | LOC_Os12g01750 | zinc finger, C3HC4 type domain containing protein, expressed |
