Table 1 Notation.

From: AutoStitcher: An Automated Program for Efficient and Robust Reconstruction of Digitized Whole Histological Sections from Tissue Fragments

Symbol

Description

Q = {Qul, Qur, Qll, Qlr}

The set of quadrant images corresponding to the upper-left, upper-right, lower-left and lower-right quadrants, respectively.

T = {Tul, Tur, Tll, Tlr}

The set of transformations of all 4 quadrant images, where each quadrant’s transformation stores the x-translation, y-translation and degrees of rotation.

Dpair(Q1, Q2)

Pair-wise intensity-based dissimilarity computed on each quadrant pair (Q1, Q2).

Mpair(Q1, Q2)

Pair-wise distance-based misalignment computed on each quadrant pair (Q1, Q2).

{V1(k), V2(k)}

The kth set of corresponding histogram vectors or pixel values V1 and V2 of a pair of quadrants, where V1 belongs to Q1 and V2 belongs to Q2.

The set of corresponding outer and inner corner points C1 and C2 of a pair of quadrants, where C1 belongs to Q1 and C2 belongs to Q2.

w1, w2

Empirically determined cost function component weights (w1, w2)

w3, w4

Inner- and outer-point weights (w3, w4)

m, n

m = Number of overhanging and n = number of corresponding pixels for a pair of adjacent edges

p, b

p = Size of rectangular patch and b = number of histogram bins for cost computation

ϕ

Dissimilarity for a non-corresponding edge pixel