Figure 5
From: Genome-wide analysis of DNA methylation in obese, lean and miniature pig breeds
DNA methylation distribution in pigs.
The DNA methylation profile for each gene region is shown by the reads that aligned with the unique locus in the genome. The gene region was defined as the regions that contained a 2-kb region upstream of the TSS, the gene body from TSS to TTS and a 2-kb region downstream of the TTS. The 2-kb upstream and downstream regions were split into 20 non-overlapping windows and the average alignment depth was calculated for each window. In the gene body, each gene was split into 40 equal windows and the average alignment depth was calculated for each window. The y-axis is the average of the normalized depth for each window.
