Table 1 Number of sequencing reads and estimates for diversity of each sample.
Sample | # of Raw reads | # of Processed reads | OTUs at 3% difference | Chao1 | coverage | ACE | Simpson | Shannon |
|---|---|---|---|---|---|---|---|---|
DC1 | 301062 | 99466 | 1313 | 1372 | 99.8% | 1427 | 0.017 | 4.975 |
DC3 | 342776 | 118812 | 1258 | 1356 | 99.8% | 1397 | 0.011 | 5.247 |
DC4 | 308328 | 101454 | 1616 | 1736 | 99.8% | 1789 | 0.008 | 5.609 |
DC5 | 222894 | 80859 | 1019 | 1205 | 99.7% | 1227 | 0.073 | 4.085 |
DC6 | 242808 | 85863 | 1105 | 1272 | 99.7% | 1301 | 0.015 | 5.073 |
DC7 | 326472 | 124409 | 434 | 512 | 99.9% | 550 | 0.467 | 1.623 |
DC8 | 428888 | 153687 | 1432 | 1626 | 99.8% | 1672 | 0.014 | 5.204 |
DC9 | 274541 | 95055 | 1167 | 1328 | 99.8% | 1343 | 0.018 | 5.089 |
DC12 | 316871 | 113583 | 1344 | 1470 | 99.8% | 1510 | 0.012 | 5.356 |
DC14 | 293206 | 101477 | 1351 | 1547 | 99.7% | 1564 | 0.014 | 5.246 |
DC15 | 295834 | 97860 | 1233 | 1413 | 99.8% | 1407 | 0.015 | 5.189 |
DC16 | 407023 | 146659 | 1354 | 1470 | 99.9% | 1513 | 0.017 | 5.005 |
DC17 | 256328 | 90603 | 1137 | 1301 | 99.7% | 1342 | 0.018 | 5.073 |
DC20 | 262383 | 97063 | 1067 | 1194 | 99.8% | 1229 | 0.033 | 4.744 |
HXH1 | 267063 | 97833 | 958 | 1080 | 99.8% | 1119 | 0.049 | 4.172 |
HXH2 | 324733 | 113927 | 930 | 1032 | 99.8% | 1062 | 0.027 | 4.453 |
HXH5 | 313294 | 119715 | 1015 | 1185 | 99.8% | 1218 | 0.071 | 4.076 |
HXH6 | 305185 | 108268 | 753 | 819 | 99.9% | 856 | 0.037 | 4.299 |
HXH7 | 282687 | 101142 | 887 | 973 | 99.8% | 1019 | 0.031 | 4.411 |
