Table 1 Summary of the PoplarGene network and 23 network components.
(Network source) description | #Nodes (coding genes coverage, %) | #Links |
|---|---|---|
PoplarGene network | 29 049 (70.3) | 1 967 631 |
(PT-CX) Co-expression network of Poplar genes using microarray experiments | 7 930 (19.2) | 282 144 |
(PT-DC) Protein domains co-occurrence between two Poplar genes | 3 022 (7.3) | 27 096 |
(PT-GN) Neighborhood conservation of Poplar genes in prokaryotic genomes | 8 881(21.5) | 213 509 |
(PT-PG) The similarity of phylogenetic profile between Poplar genes | 11 623 (28.1) | 305 305 |
(AT-CC) Transfer of co-citation links in A. thaliana orthology network | 7 243 (17.5) | 65 474 |
(AT-CX) Transfer of co-expression links in A. thaliana orthology network | 18 290 (44.2) | 418 367 |
(AT-HT) Transfer of high-throughput PPI in A. thaliana orthology network | 3 442 (8.3) | 6 390 |
(AT-LC) Transfer of literature curated PPI in A. thaliana orthology network | 2 290 (5.5) | 3 952 |
(CE-CX) Transfer of co-expression links in C. elegans orthology network | 6 273 (15.2) | 104 876 |
(CE-HT) Transfer of high-throughput PPI in C. elegans orthology network | 1 781 (4.3) | 5 296 |
(CE-LC) Transfer of co-citation links in C. elegans orthology network | 1 243 (3.0) | 4 873 |
(DM-CX) Transfer of co-expression links in D. melanogaster orthology network | 1 719 (4.2) | 15 033 |
(DM-HT) Transfer of high-throughput PPI in D. melanogaster orthology network | 1 272 (3.1) | 3 120 |
(DM-LC) Transfer of literature curated PPI in D. melanogaster orthology network | 104 (0.3) | 183 |
(HS-CX) Transfer of co-expression links in H. sapiens orthology network | 5 100 (12.3) | 88 318 |
(HS-HT) Transfer of high-throughput PPI in H. sapiens orthology network | 1 661(4.0) | 5 716 |
(HS-LC) Transfer of literature curated PPI in H. sapiens orthology network | 5 176 (12.5) | 55 102 |
(OS-CX) Transfer of co-expression links in O. sativa orthology network | 3 187 (7.7) | 30 275 |
(OS-LC) Transfer of literature curated PPI in O. sativa orthology network | 28 (0.1) | 80 |
(SC-CC) Transfer of co-citation links in S. cerevisiae orthology network | 6 396 (15.5) | 146 710 |
(SC-CX) Transfer of co-expression links in S. cerevisiae orthology network | 4 866 (11.8) | 141 350 |
(SC-HT) Transfer of high-throughput PPI in S. cerevisiae orthology network | 5 486 (13.3) | 274 397 |
(SC-LC) Transfer of literature curated PPI in S. cerevisiae orthology network | 6 086 (14.7) | 147 250 |
