Table 4 The 23 human microbial communities that passed the neutrality exact tests with Etienne sampling formula (V3-V5 region)*.

From: Testing the Neutral Theory of Biodiversity with Human Microbiome Datasets

Site	ID	J	S	θ	m	Log(L₀)	Log(L₁)	q-value	p-value
Anterior nares	700105415	130	93	144.71	0.999995	−8.40	−9.67	2.5417	0.1109
Stool	700106979	413	292	2029.70	0.591395	−12.16	−10.51	3.3049	0.0691
Saliva	700106858	227	144	168.36	0.999857	−12.41	−13.24	1.6687	0.1964
Saliva	700106000	161	101	183.19	0.703965	−10.93	−11.94	2.0187	0.1554
Left Antecubital fossa	700021896	377	82	32.01	0.999912	−34.90	−36.18	2.5604	0.1096
Left Antecubital fossa	700024590	173	27	8.73	0.999985	−24.35	−24.39	0.0667	0.7961
Left Antecubital fossa	700021810	364	81	31.99	0.999979	−33.97	−35.23	2.5302	0.1117
Left Retroauricular crease	700037027	110	14	4.04	0.999998	−18.16	−17.60	1.1143	0.2912
Left Retroauricular crease	700024129	199	51	21.84	0.999893	−24.01	−23.59	0.8559	0.3549
Left Retroauricular crease	700024647	174	31	10.72	0.999990	−24.40	−23.35	2.0904	0.1482
Right Antecubital fossa	700110106	165	119	190.08	0.999997	−9.16	−10.61	2.9033	0.0884
Right Antecubital fossa	700105617	128	21	14.37	0.166726	−20.11	−18.31	3.6134	0.0573
Right Antecubital fossa	700037030	114	38	19.55	0.999967	−16.44	−16.00	0.8825	0.3475
Right Antecubital fossa	700035745	329	37	10.44	0.985781	−35.34	−34.06	2.5613	0.1095
Right Antecubital fossa	700015672	331	106	53.53	0.999989	−28.24	−30.15	3.8298	0.0503
Right Antecubital fossa	700023394	382	62	20.76	0.999987	−37.39	−36.55	1.6819	0.1947
Right Antecubital fossa	700023241	922	95	26.36	0.999952	−62.30	−62.60	0.6052	0.4366
Right Retroauricular crease	700023171	641	111	38.46	0.999779	−47.49	−47.16	0.6634	0.4154
Mid vagina	700099742	4365	183	38.45	0.999805	−144.58	−146.30	3.4341	0.0639
Posterior fornix	700110242	3419	155	33.31	0.999917	−127.00	−125.46	3.0837	0.0791
Posterior fornix	700105684	3803	156	32.65	0.999534	−133.92	−132.29	3.2624	0.0709
Posterior fornix	700097502	2983	163	36.92	0.999941	−118.04	−118.87	1.6699	0.1963
Posterior fornix	700099080	5079	175	34.93	0.999892	−155.68	−156.69	2.0075	0.1565

^*J: the total number of reads in the sample, S: the number of species in the sample, θ: fundamental biodiversity, m: immigration probability, Log(L₀) is the log-likelihood of the observed sample, Log(L₁) is the log-likelihood predicted by the neutral model, and q-value and p-value are the values of the likelihood ratios.

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Table 4 The 23 human microbial communities that passed the neutrality exact tests with Etienne sampling formula (V3-V5 region)*.

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