Table 1 Results from the association studies under the recessive genetic model.

From: Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption

SNP

Chr

Pos

A0

A1

β

SE

p

β rep

SE_rep

p_rep

6:107541346:I

6

107.5

S

L

0.086

0.014

1.05e-09

0.025

0.014

0.084

6:107546337:D

6

107.5

L

S

0.086

0.014

2.30e-09

0.024

0.015

0.112

rs12191399

6

107.5

T

C

0.086

0.014

9.84e-10

0.025

0.014

0.083

rs2216084

6

107.6

C

T

0.082

0.014

9.25e-09

0.037

0.014

0.01

rs4945774

6

107.5

C

A

0.086

0.014

1.04e-09

0.025

0.014

0.084

rs4946824

6

107.5

T

C

0.086

0.014

1.27e-09

0.026

0.015

0.085

rs6568476

6

107.5

T

C

0.084

0.014

2.75e-09

0.025

0.014

0.089

rs6568477

6

107.5

C

T

0.086

0.014

1.05e-09

0.025

0.014

0.085

rs6568479

6

107.5

A

G

0.086

0.014

8.91e-10

0.026

0.014

0.07

rs6915343

6

107.5

C

A

0.086

0.014

1.01e-09

0.024

0.014

0.086

rs6919118

6

107.5

T

C

0.086

0.014

1.06e-09

0.025

0.014

0.085

rs6942255

6

107.6

G

A

0.082

0.014

9.79e-09

0.037

0.014

0.01

rs7741724

6

107.5

G

A

0.086

0.014

1.05e-09

0.025

0.014

0.078

rs7741987

6

107.5

A

G

0.086

0.014

1.05e-09

0.025

0.014

0.085

rs7745311

6

107.6

T

C

0.081

0.014

1.23e-08

0.037

0.014

0.008

rs7749559

6

107.5

T

C

0.084

0.015

1.24e-08

0.03

0.015

0.055

rs7750154

6

107.5

T

G

0.086

0.014

1.14e-09

0.025

0.014

0.084

rs7754744

6

107.6

A

G

0.082

0.014

8.80e-09

0.037

0.014

0.01

rs9320207

6

107.5

T

C

0.086

0.014

1.11e-09

0.025

0.014

0.085

rs9372155

6

107.5

C

T

0.086

0.014

1.14e-09

0.025

0.014

0.085

rs9386627

6

107.5

T

C

0.086

0.014

1.01e-09

0.025

0.014

0.082

rs9386630

6

107.6

T

G

0.082

0.014

1.07e-08

0.037

0.014

0.009

rs9398123

6

107.5

A

C

0.086

0.014

1.13e-09

0.025

0.014

0.085

rs9398124

6

107.5

T

C

0.086

0.014

1.12e-09

0.025

0.014

0.085

rs9398125

6

107.5

A

C

0.086

0.014

1.05e-09

0.025

0.014

0.083

rs9398126

6

107.5

T

C

0.086

0.014

1.00e-09

0.025

0.014

0.082

rs9791276

6

107.5

C

T

0.086

0.014

1.15e-09

0.025

0.014

0.086

rs9791325

6

107.5

T

G

0.086

0.014

1.15e-09

0.025

0.014

0.086

  1. Only SNPs significant at the discovery step were reported. Bold SNPs represent replicated SNPs. The β rep, SE rep and p rep columns represent the results for the replication analysis in the ERF cohort. Geneomic positions (Pos) are reported in Mb.
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