Table 4 DBG2OLC assembly performance comparison on various genomes.
Genome | Size | Coverage | NG50 | Contigs | NGA50 | Identity | Misassemblies | Longest | Sum |
|---|---|---|---|---|---|---|---|---|---|
A. thaliana | 120 Mbp | 10x PacBio | 405,464 | 881 | 258,924 | 99.77% | 704 | 1,549,329 | 119 Mb |
|  |  | 20x PacBio | 2,431,755 | 306 | 926,138 | 99.90% | 117 | 6,015,430 | 120 Mb |
|  |  | 40x PacBio | 3,601,597 | 243 | 1,605,981 | 99.93% | 131 | 15,473,059 | 129 Mb |
H. sapiens | 3.0 Gbp | 10x PacBio | 432,739 | 16,689 | 347,104 | 99.56% | — | 3,507,306 | 2.97 G |
|  |  | 20x PacBio | 1,886,756 | 9,757 | 1,416,766 | 99.82% | — | 14,597,500 | 3.13 Gb |
|  |  | 30x longest PacBio | 6,085,133 | 13,095 | 4,124,714 | 99.85% | — | 23,825,526 | 3.21 Gb |
E. coli | 4.6 Mbp | 30x Nanopore | 4,680,635 | 1 | 1,850,974 | 99.77% | 1 | 4,680,635 | 4.7 Mb |
