Table 1 Genome properties of the isolate MET.
Property | Value | Property | Value |
|---|---|---|---|
Raw reads size (bp) | 2,050,913,844 | CDS | 5762 |
Clean reads size (bp) | 1,743,276,767 | Total size (bp) | 5,816,232 |
Genome size (bp) | 6,340,880 | Mean length (bp) | 971 |
Fold coverage | 275× | miRNA numbers | 11 |
Scaffold number | 30 | miRNA family | 11 |
Scaffold N50 (bp) | 632,855 | rRNA numbers | 196 |
Contig number (> 500 bp) | 69 | rRNA family | 3 |
Contig length (bp) | 6,336,286 | tRNA numbers | 35 |
Contig N50 (bp) | 184,392 | tRNA family | 31 |
GC content (%) | 62.47 | Protein-coding genes | 5987 |
COG annotation | 4,075 | Pseudogene | 6 |
GO annotation | 4,072 | Kmer depth | 71 |
KEGG annotation | 2,423 | ncRNAs | 1 |
Pfam annotation | 2,722 | 5S rRNAs | 1 |
Swiss-Prot annotation | 3,794 | 16S rRNAs | 1 |
TrEMBL annotation | 4,376 | 23S rRNAs | 1 |
nr annotation | 5,906 | TRF repetitive sequence number | 370 |
All annotated genes | 5,907 | TRF repetitive sequence length (bp) | 16,758 |
Total gene number in gene family | 5,540 | Gene in unique gene family | 23 |
Family number | 5,371 | Gene not in gene family | 447 |
Unique gene family | 9 | Total unique gene | 470 |
