Table 2 Summary of InterPro families from downregulated transcripts that were annotated in L. migratoria after PI ingestion.
Putative function | InterPro § | # Seq ¥ | Description | Fold Change ¤ |
|---|---|---|---|---|
Structural | IPR004000 | 15 | Actin-related protein | 0.6–0.7 |
IPR002928 | 6 | Myosin | 0.7–0.8 | |
IPR001781 | 4 | Zinc finger, LIM-type | 0.6–0.8 | |
IPR002035 | 3 | von Willebrand factor, type A | 0.4–0.7 | |
IPR013098 | 2 | Immunoglobulin I-set domain | 0.7–0.8 | |
IPR027707 | 2 | Troponin T | 0.6–0.7 | |
IPR001715 | 1 | Calponin homology domain | 0.7 | |
IPR000301 | 1 | Tetraspanin | 0.8 | |
IPR001152 | 1 | Thymosin β-4 | 0.8 | |
Defense | IPR001304 | 3 | C-type lectin | 0.4–0.6 |
Carbohydrate metabolism | IPR001360 | 3 | β-glucosidase | 0.4–0.6 |
IPR001312 | 2 | Hexokinase | 0.5–0.7 | |
IPR001701 | 1 | Cellulase | 0.7 | |
Lipid metabolism | IPR000566 | 1 | Lipocalin | 0.7 |
IPR002172 | 1 | Low-density lipoprotein (LDL) receptor class A | 0.8 | |
Other metabolism | IPR002198 | 1 | Short-chain dehydrogenase | 0.7 |
IPR002085 | 1 | Long-chain alcohol dehydrogenase | 0.7 | |
IPR023186 | 1 | Inosine/uridine-nucleoside hydrolase | 0.8 | |
IPR001148 | 1 | Alpha carbonic anhydrase | 0.7 | |
IPR008597 | 1 | Destabilase | 0.6 | |
Protein digestion | IPR000994 | 1 | Peptidase M24, aminopeptidase | 0.7 |
IPR008257 | 1 | Peptidase M19, dipeptidase | 0.6 | |
Detox/Stress response | IPR002018 | 3 | Carboxylesterase, type B | 0.6–0.7 |
IPR002007 | 1 | Haem peroxidase | 0.7 | |
IPR002403 | 1 | Cytochrome P450, E-class, group IV | 0.7 | |
IPR008978 | 1 | Heat shock HSP20-like chaperone | 0.6 | |
Other | IPR002048 | 1 | EF-hand domain | 0.7 |
IPR011011 | 1 | Zinc finger, FYVE/PHD-type | 0.7 | |
IPR001253 | 1 | Translation initiation factor 1A (eIF-1A) | 0.6 | |
IPR020309 | 1 | Uncharacterized protein family, CD034/YQF4 | 0.7 | |
IPR004119 | 1 | Protein of unknown function DUF227 | 0.5 | |
IPR012464 | 1 | Protein of unknown function DUF1676 | 0.6 |
