Table 1 The 18 gene expression datasets, PCA scores, and number of DEGs.
Name | Contrast (no. of chips) | Reference | PCA score | DEGs |
|---|---|---|---|---|
Breast_CD44_GSE15192 | CD44+/CD24−(4) vs CD44−/CD24+(4) | 1 | 3093 | |
Breast_CD44_GSE36643 | CD44+/CD24−(3) vs CD44−/CD24+(3) | 1 | 1137 | |
Breast_CD44_GSE7513 | CD44+/CD24−(14) vs non-CD44+/CD24−(15) | 0.93 | 1278 | |
Breast_GD2_GSE36643 | GD2+ (3) vs GD2−(3) | 1 | 465 | |
Breast_MS_GSE7515 | MS (15) vs non-MS (11) | 1 | 2877 | |
Colon_CD133_GSE24747 | CD133+ (3) vs CD133−(3) | N/A | 1 | 247 |
Glioma_CD133_GSE24716 | CD133+ (4) vs CD133−(4) | 1 | 606 | |
Glioma_CD133_GSE37120 | CD133+ (6) vs CD133−(6) | N/A | 0.75 | 1400 |
Glioma_MS_GSE23806 | MS (17) vs non-MS (12) | 1 | 2049 | |
Glioma-diff_CD1d33_GSE37120 | CD133+ (6) vs CD133−(6) | N/A | 0.83 | 1291 |
Lung_CD133_GSE35603 | CD133+ (3) vs CD133−(3) | 1 | 5591 | |
Lung_Chemo_GSE21656 | cisplatin-resistant (3) vs cisplatin-senstive (3) | 1 | 123 | |
Ovarian_MS_GSE28799 | MS (3) vs non-MS (3) | 1 | 2100 | |
Prostate_MS_GSE19713 | MS (6) vs non-MS (6) | 0.92 | 618 | |
Colon_adeno ma_GSE08671 | ade (32) vs nor (32) | 1 | 1927 | |
hES_GSE27362 | hES (3) vs fbs (3) | 1 | 3106 | |
iPS_GSE27362 | iPS (8) vs fbs (3) | 1 | 3060 | |
TGF-b-lung_EMT_GSE17708 | EMT (3) vs non-EMT (3) | 1 | 2279 |
