Table 2 Assignment of mRNA reads to the key bacterial species (or genera) within the human anterior nares.
From: Exploring the transcriptome of Staphylococcus aureus in its natural niche
Reads assigned to | 1W | 1S | 2W | 2S | 3W | 3S |
|---|---|---|---|---|---|---|
mRNA | 2,967,566 | 3,524,160 | 2,441,919 | 8,366,998 | 1,919,599 | 2,850,659 |
S. aureus, similarity* ≥90% | 6,342 | 817 | 39,512 | 70,016 | 13,036 | 43,310 |
S. epidermidis, similarity ≥90% | 11,456 | 47,930 | 22,475 | 133,478 | 1,472 | 7,077 |
Corynebacterium spp, similarity ≥80% | 16,855 | 153,932 | 35,386 | 73,409 | 1,589 | 5,024 |
D. pigrum, similarity ≥80% | 114 | 139,266 | 477 | 2,890 | 92 | 637 |
F. magna, similarity ≥80% | 2,334 | 6,985 | 12,719 | 18,570 | 272 | 1,429 |
Peptoniphilus spp, similarity ≥80% | 1,083 | 3,875 | 5,275 | 10,505 | 86 | 557 |
P. acnes, similarity ≥80% | 8,621 | 21,772 | 63,422 | 104,072 | 1,368 | 12,953 |
total of reads assigned to above bacteria | 45,582 | 36,7543 | 176,840 | 309,796 | 18,158 | 70,886 |
% of potential mRNA reads that were assigned to above bacteria | 1.7 | 11.2 | 7.8 | 5.8 | 1.1 | 2.8 |
