Figure 3 | Scientific Reports

Figure 3

From: The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

Figure 3

Association of lncRNAs with transposable elements (TEs).

(a) Percentage of coding and lncRNA genes containing an exonic TE fragment in human, mouse, zebrafish and tetraodon. (b) Coverage of different classes of TEs in transcripts of tetraodon. (c,d) fraction of the transcriptome containing sequences from specific TE (c) classes and (d) families with respect to the respective TEs genomic averages. Larger families are to the right. On the y-axis, enrichments are above zero and depletions are below zero. ERVK families are particularly enriched. P and L indicate respectively the number of coding and lncRNA loci associated with a particular family of TEs.

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