Table 1 Nodal supports and branch lengths for major lineages in each tree.

From: Application of RNA-seq for mitogenome reconstruction, and reconsideration of long-branch artifacts in Hemiptera phylogeny

Dataset	Psocoptera excluding Liposcelis		Thysanoptera		Phthiraptera including Liposcelis		Hemiptera		Homoptera incuding Coleorrhyncha		Sternorrhyncha		Auchenorrhyncha including Coleorrhyncha		Coleorrhyncha		Heteroptera		Aphidoidea
Dataset	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL	NS	BL
RAxML analyses
122taxa_rRNAs	94	0.53	100	1.11	67	1.27	98	1.18	—	—	<50	1.18	56	0.77	68	0.65	100	0.71	100	0.49
122taxa_tRNAs	89	0.52	100	1.61	81	2.40	—	—	—	—	—	—	—	—	95	0.88	100	1.03	100	0.59
122taxa_PCG123	100	2.16	100	5.16	100	9.16	—	—	—	—	56	7.64	—	—	100	3.28	100	4.06	100	3.95
122taxa_PCG_AA	100	0.81	100	2.13	100	3.47	—	—	—	—	<50	3.31	—	—	100	1.41	100	1.76	100	1.81
122taxa_7gene_AA	100	0.59	100	1.92	100	2.84	—	—	—	—	<50	2.63	—	—	99	0.98	100	1.38	100	1.54
122taxa_PCG12	100	0.31	100	0.72	100	1.40	—	—	—	—	<50	1.17	—	—	100	0.52	100	0.57	100	0.57
122taxa_PCG3RY	100	0.93	100	2.45	100	4.37	—	—	—	—	—	—	—	—	100	1.46	100	1.76	100	1.87
122taxa_PCG1RY2nd	100	0.35	100	1.00	100	1.74	—	—	—	—	<50	1.53	—	—	100	0.57	100	0.73	100	0.80
122taxa_PCGDegen	100	0.50	100	1.47	100	2.49	—	—	—	—	53	2.02	—	—	100	0.89	100	1.00	100	1.12
122taxa_PCGRNA	100	0.51	100	1.14	100	1.77	—	—	—	—	97	1.74	—	—	99	0.68	100	0.83	100	0.75
122taxa_PCG12RNA	100	0.35	100	0.86	100	1.42	—	—	—	—	<50	1.14	—	—	<50	0.52	100	0.60	100	0.53
122taxa_PCG1RY2ndRNA	100	0.43	100	1.19	100	1.69	—	—	—	—	—	—	—	—	—	—	100	0.71	100	0.93
122taxa_PCGDegenRNA	100	0.36	100	0.94	100	1.53	—	—	—	—	77	1.25	—	—	79	0.55	100	0.63	100	0.60
106taxa_PCGRNA	100	0.49	—	—	—	—	100	1.79	—	—	97	1.79	—	—	95	0.78	100	0.92	100	0.69
MrBayes analyses
122taxa_rRNAs	1.00	0.10	1.00	0.19	1.00	0.19	1.00	0.24	1.00	0.24	1.00	0.24	—	—	1.00	0.10	1.00	0.08	1.00	0.12
122taxa_tRNAs	1.00	0.34	1.00	1.17	1.00	1.54	—	—	—	—	—	—	—	—	1.00	0.69	1.00	0.44	1.00	0.28
122taxa_PCG123	1.00	1.69	1.00	3.04	1.00	7.18	—	—	—	—	1.00	6.38	—	—	1.00	2.82	2.09		1.00	3.40
122taxa_PCG_AA	1.00	0.40	1.00	1.00	1.00	1.45	—	—	—	—	1.00	1.43	—	—	1.00	0.73	1.00	0.72	1.00	0.84
122taxa_7gene_AA	1.00	0.28	1.00	0.75	1.00	0.97	—	—	—	—	1.00	1.11	—	—	1.00	0.58	1.00	0.45	1.00	0.67
122taxa_PCG12	1.00	0.33	1.00	0.91	1.00	1.53	—	—	—	—	—	—	—	—	1.00	0.66	1.00	0.51	1.00	0.75
122taxa_PCG3RY	1.00	0.72	1.00	1.71	1.00	2.98	—	—	—	—	0.97	2.83	—	—	1.00	1.27	1.00	0.94	1.00	1.48
122taxa_PCG1RY2nd	1.00	0.53	1.00	1.46	1.00	2.31	—	—	—	—	—	—	—	—	1.00	0.93	1.00	0.82	1.00	1.19
122taxa_PCGDegen	1.00	0.46	1.00	1.37	1.00	2.25	—	—	—	—	<0.90	2.22	—	—	1.00	0.89	1.00	0.80	1.00	1.14
122taxa_PCGRNA	1.00	1.41	1.00	3.37	1.00	5.09	—	—	—	—	1.00	4.74	—	—	1.00	2.09	1.00	1.80	1.00	2.45
122taxa_PCG12RNA	1.00	0.55	1.00	1.41	1.00	2.02	—	—	—	—	—	—	—	—	1.00	0.94	—	—	1.00	1.25
122taxa_PCG1RY2ndRNA	1.00	0.03	1.00	0.09	1.00	0.14	—	—	—	—	—	—	—	—	1.00	0.06	—	—	1.00	0.08
122taxa_PCGDegenRNA	1.00	0.24	1.00	0.69	1.00	0.95	—	—	—	—	—	—	—	—	1.00	0.43	<0.90	0.44	1.00	0.46
106taxa_PCGRNA	1.00	0.50	—	—	—	—	1.00	2.00	—	—	1.00	2.00	—	—	1.00	0.79	1.00	0.83	1.00	0.93
PhyloBayes analyses
122taxa_rRNAs	0.98	1.23	1.00	3.19	<0.90	3.63	<0.90	3.42	<0.90	3.42	<0.90	3.42	—	—	1.00	1.19	1.00	1.37	<0.90	1.48
122taxa_tRNAs	0.99	0.72	1.00	3.24	<0.90	6.33	—	—	—	—	—	—	—	—	1.00	1.50	1.00	1.21	<0.90	0.91
122taxa_PCG123	1.00	1.04	1.00	2.83	<0.90	6.38	—	—	—	—	<0.90	5.70	—	—	1.00	1.76	<0.90	1.19	<0.90	2.42
122taxa_PCG_AA	1.00	0.67	1.00	1.26	1.00	5.28	—	—	—	—	<0.90	4.42	—	—	1.00	1.56	1.00	1.28	1.00	2.22
122taxa_7gene_AA	1.00	0.49	1.00	1.68	1.00	3.44	—	—	—	—	0.93	2.21	—	—	1.00	1.35	1.00	1.15	1.00	1.78
122taxa_PCG12	<0.90	0.54	1.00	2.11	<0.90	4.96	—	—	—	—	<0.90	3.52	—	—	1.00	1.12	0.90	0.93	1.00	1.73
122taxa_PCG3RY	0.92	0.52	1.00	2.24	0.95	5.05	—	—	—	—	<0.90	3.65	—	—	1.00	1.21	1.00	0.93	1.00	1.83
122taxa_PCG1RY2nd	1.00	0.50	1.00	1.93	1.00	4.24	—	—	—	—	<0.90	2.53	—	—	1.00	0.95	1.00	0.86	1.00	1.46
122taxa_PCGDegen	—	—	1.00	1.78	<0.90	5.36	—	—	—	—	0.91	3.23	<0.90	1.38	1.00	0.96	0.96	0.80	1.00	1.37
122taxa_PCGRNA	1.00	0.94	1.00	2.88	<0.90	7.25	—	—	—	—	<0.90	5.02	<0.90	1.92	1.00	1.59	<0.90	1.13	1.00	1.93
122taxa_PCG12RNA	1.00	0.71	1.00	2.50	1.00	5.47	—	—	—	—	1.00	3.94	—	—	1.00	1.26	1.00	1.06	1.00	1.65
122taxa_PCG1RY2ndRNA	0.99	0.63	1.00	2.64	1.00	4.88	<0.90	2.12	—	—	—	—	—	—	1.00	1.17	—	—	1.00	1.39
122taxa_PCGDegenRNA	1.00	0.64	1.00	2.40	1.00	5.57	—	—	—	—	1.00	3.64	—	—	1.00	1.14	1.00	0.96	1.00	1.54
106taxa_PCGRNA	1.00	0.97	—	—	—	—	1.00	5.80	—	—	1.00	5.80	—	—	1.00	1.79	1.00	1.43	1.00	2.29

The branch lengths were calculated from the longest terminal taxon of each lineage to the common ancestor to the Paraneoptera.
“—” denote the monophyletic lineage not to be recovered by the dataset.
NS: nodal support; BL: branch length.

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Table 1 Nodal supports and branch lengths for major lineages in each tree.

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