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Figure 2

From: Genome-Wide Association Study Dissecting the Genetic Architecture Underlying the Branch Angle Trait in Rapeseed (Brassica napus L.)

Figure 2

Genome-wide association study of the rapeseed branch angle.

(a) Manhattan plot of MLM for branch angle (BLUP). (b) Quantile-quantile plot of MLM for branch angle (BLUP). (c) Manhattan plot of GLM for branch angle (BLUP). (d) Quantile-quantile plot of GLM for branch angle (BLUP). (e) Manhattan plot of the A-D test for branch angle (BLUP). (f) Quantile-quantile plot of the A-D test for branch angle (BLUP). The dashed horizontal line depicts the Bonferroni-adjusted significance threshold (−log10(p) = 4.3 for GLM and MLM; −log10(p) = 5.6 for the A-D test). GWAS loci are indicated with red dots and the corresponding genes are annotated. If more than one candidate gene was identified within the observed LD decay of one locus, the most likely candidate gene is annotated in the Manhattan plot. Full gene information is provided in Supplementary Data S7.

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