Table 1 Hits with the highest scores (SEQUEST) in mass spectrometry analyses of proteins from pull-down assay with HB-GAM and BSA magnetic beads from hippocampal neuronal cultures.
From: HB-GAM (pleiotrophin) reverses inhibition of neural regeneration by the CNS extracellular matrix
Accession | Description | Coverage BSA | #Peptides BSA | Score HBGAM_1 | #Peptides HBGAM_1 | Score HBGAM_2 | #Peptides HBGAM_2 |
|---|---|---|---|---|---|---|---|
P63090 | Pleiotrophin OS = Rattus norvegicus GN = Ptn PE = 1 SV = 1 - [PTN_RAT] | 60.48 | 7 | 57.62 | 8 | ||
P11442 | Clathrin heavy chain 1 OS = Rattus norvegicus GN = Cltc PE = 1 SV = 3 - [CLH_RAT] | 0 | 42.81 | 10 | 50.11 | 15 | |
P50137 | Transketolase OS = Rattus norvegicus GN = Tkt PE = 1 SV = 1 - [TKT_RAT] | 0 | 24.04 | 7 | 27.27 | 4 | |
Q9EPH8 | Polyadenylate-binding protein 1 OS = Rattus norvegicus GN = Pabpc1 PE = 2 SV = 1 - [PABP1_RAT] | 0 | 17.45 | 5 | 23.63 | 6 | |
P85845 | Fascin OS = Rattus norvegicus GN = Fscn1 PE = 1 SV = 2 - [FSCN1_RAT] | 0 | 15.33 | 3 | 13.67 | 3 | |
P09330 | Ribose-phosphate pyrophosphokinase 2 OS = Rattus norvegicus GN = Prps2 PE = 1 SV = 3 - [PRPS2_RAT] | 13.82 | 3 | 10.67 | 2 | ||
Q4FZT9 | 26S proteasome non-ATPase regulatory subunit 2 OS = Rattus norvegicus GN = Psmd2 PE = 2 SV = 1 - [PSMD2_RAT] | 0 | 13.44 | 2 | 3.14 | 1 | |
P51653 | Glypican-2 OS = Rattus norvegicus GN = Gpc2 PE = 1 SV = 1 - [GPC2_RAT] | 12.36 | 3 | 9.39 | 3 | ||
Q9JMJ4 | Pre-mRNA-processing factor 19 OS = Rattus norvegicus GN = Prpf19 PE = 2 SV = 2 - [PRP19_RAT] | 0 | 12.14 | 3 | 20.66 | 7 | |
Q63610 | Tropomyosin alpha-3 chain OS = Rattus norvegicus GN = Tpm3 PE = 1 SV = 2 - [TPM3_RAT] | 0 | 11.69 | 5 | 12.79 | 5 | |
O88761 | 26S proteasome non-ATPase regulatory subunit 1 OS = Rattus norvegicus GN = Psmd1 PE = 2 SV = 1 - [PSMD1_RAT] | 0 | 10.28 | 2 | 10.48 | 3 | |
P61765 | Syntaxin-binding protein 1 OS = Rattus norvegicus GN = Stxbp1 PE = 1 SV = 1 - [STXB1_RAT] | 9.83 | 3 | 7.6 | 3 | ||
P18484 | AP-2 complex subunit alpha-2 OS = Rattus norvegicus GN = Ap2a2 PE = 1 SV = 3 - [AP2A2_RAT] | 0 | 9.33 | 3 | 14.58 | 4 | |
P62250 | 40S ribosomal protein S16 OS = Rattus norvegicus GN = Rps16 PE = 1 SV = 2 - [RS16_RAT] | 0 | 9.24 | 4 | 12.95 | 4 | |
P18422 | Proteasome subunit alpha type-3 OS = Rattus norvegicus GN = Psma3 PE = 1 SV = 3 - [PSA3_RAT] | 9.21 | 1 | 6.99 | 1 | ||
P62832 | 60S ribosomal protein L23 OS = Rattus norvegicus GN = Rpl23 PE = 2 SV = 1 - [RL23_RAT] | 0 | 9.11 | 2 | 15.01 | 3 | |
P04897 | Guanine nucleotide-binding protein G(i) subunit alpha-2 OS = Rattus norvegicus GN = Gnai2 PE = 1 SV = 3 - [GNAI2_RAT] | 0 | 8.94 | 3 | 8.13 | 3 | |
“P40329 | ”“Arginine–tRNA ligase cytoplasmic OS = Rattus norvegicus GN = Rars PE = 1 SV = 2 - [SYRC_RAT]”“ | 8.7 | 3 | 5.28 | |||
“P62703 | ”“40S ribosomal protein S4 X isoform OS = Rattus norvegicus GN = Rps4x PE = 2 SV = 2 - [RS4X_RAT]”“ | 7.97 | 3 | 15.66 | |||
P62716 | Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS = Rattus norvegicus GN = Ppp2cb PE = 1 SV = 1 - [PP2AB_RAT] | 0 | 7.97 | 2 | 6.97 | 3 |
