Table 7 Sulfur deprivation-responsive lncRNAs targeting photosynthetic electron transport chain proteins.
Location | Gene | Description | log2 (fold change) | p value | LncRNA ID | CS FPKM | C FPKM | log2 (fold change) | p value |
|---|---|---|---|---|---|---|---|---|---|
Photosystem II | PSBQ↓ | oxygen evolving enhancer protein 3 | −3.4316 | 5.00E-05 | XLOC_069036↑ | 3.17 | 1.62 | 0.9650 | 0.00095 |
PSBW↓ | photosystem II reaction center W protein | −2.7594 | 5.00E-05 | XLOC_070848↑ | 14.60 | 7.19 | 1.0226 | 0.0004 | |
|  | XLOC_070910↑ | 1.64 | 0.28 | 2.5673 | 0.00255 | ||||
CPLD45↓ | hypothetical protein | −3.9667 | 5.00E-05 | XLOC_015691↓ | 0.00 | 6.35 | nd | 0.00015 | |
LHCBM5↓ | chlorophyll a-b binding protein of LHCII | −4.0723 | 5.00E-05 | XLOC_052680↓ | 3.26 | 30.00 | −3.2036 | 5.00E-05 | |
LHCBM2↓ | light-harvesting protein of photosystem II | −2.5739 | 5.00E-05 | XLOC_037917↓ | 2.29 | 8.18 | −1.8354 | 5.00E-05 | |
XLOC_037244↑ | 1.26 | 0.42 | 1.5935 | 0.00085 | |||||
XLOC_037246↓ | 1.37 | 7.67 | −2.4791 | 0.00345 | |||||
XLOC_037215↑ | 4.20 | 0.20 | 4.4097 | 5.00E-05 | |||||
LHCBM7↓ | chlorophyll a-b binding protein of LHCII | −4.1974 | 5.00E-05 | XLOC_037244↑ | 1.26 | 0.42 | 1.5935 | 0.00085 | |
XLOC_037246↓ | 1.37 | 7.67 | −2.4791 | 0.00345 | |||||
XLOC_037917↓ | 2.29 | 8.18 | −1.8354 | 5.00E-05 | |||||
LHCBM1↓ | chlorophyll a-b binding protein of LHCII | −3.1900 | 5.00E-05 | XLOC_064073↓ | 0.73 | 6.04 | −3.0516 | 0.0001 | |
LHCB4↓ | chlorophyll a-b binding protein of photosystem II | −3.6009 | 5.00E-05 | XLOC_050637↓ | 11.34 | 15.85 | −0.4837 | 0.0146 | |
Photosystem I | PSAE↓ | photosystem I 8.1 kDa reaction center subunit IV | −3.7333 | 5.00E-05 | XLOC_019240↑ | 2.02 | 1.11 | 0.8697 | 0.00985 |
PSAG↓ | photosystem I reaction center subunit V | −3.3373 | 5.00E-05 | XLOC_074957↓ | 3.16 | 7.02 | −1.1509 | 5.00E-05 | |
PSAI↓ | photosystem I reaction center subunit VIII | −2.5505 | 5.00E-05 | XLOC_021615↑ | 2.65 | 0.34 | 2.9641 | 5.00E-05 | |
XLOC_021656↓ | 6.55 | 24.07 | −1.8769 | 5.00E-05 | |||||
PSAL↓ | photosystem I reaction center subunit XI | −2.7222 | 5.00E-05 | XLOC_024559↑ | 81.57 | 47.16 | 0.7905 | 0.00895 | |
LHCSR3↑ | stress-related chlorophyll a/b binding protein 3 | 8.6919 | 5.00E-05 | XLOC_048026↓ | 2.91 | 5.87 | −1.0121 | 0.00055 | |
LHCA3↓ | light-harvesting chlorophyll-a/b protein of photosystem I, type III | −3.2610 | 5.00E-05 | XLOC_069667↑ | 1.91 | 0.75 | 1.3533 | 5.00E-05 | |
LHCP2↓ | regulatory chlorophyll a/b binding protein | −0.6977 | 0.00065 | XLOC_010876↑ | 36.05 | 13.87 | 1.3782 | 5.00E-05 | |
XLOC_011835↑ | 4.11 | 1.07 | 1.9458 | 0.00025 | |||||
LHCA9↓ | light-harvesting protein of photosystem I | −2.7130 | 5.00E-05 | XLOC_032037↑ | 17165.10 | 5873.25 | 1.5473 | 5.00E-05 | |
Photosynthetic electron transport | PETF↓ | apoferredoxin | −4.4579 | 5.00E-05 | XLOC_033091↑ | 97.04 | 7.05 | 3.7820 | 5.00E-05 |
XLOC_033128↑ | 9.32 | 4.99 | 0.9032 | 0.00045 | |||||
XLOC_033894↑ | 43.83 | 0.90 | 5.5991 | 0.0089 | |||||
FDX5↓ | apoferredoxin | −8.1388 | 5.00E-05 | XLOC_027503↑ | 4.39 | 1.32 | 1.7350 | 0.00315 | |
FNR1↓ | ferredoxin-nadp reductase | −4.4283 | 5.00E-05 | XLOC_051494↑ | 185.42 | 0.51 | 8.5152 | 5.00E-05 | |
XLOC_051478↑ | 12.03 | 7.14 | 0.7535 | 0.0002 | |||||
CYC4↓ | chloroplast cytochrome c | −1.1520 | 0.0018 | XLOC_029266↓ | 2.59 | 5.40 | −1.0604 | 0.0022 | |
ATP synthase | ATPD↓ | chloroplast ATP synthase delta chain | −2.2429 | 5.00E-05 | XLOC_069667↑ | 1.91 | 0.75 | 1.3533 | 5.00E-05 |
ATPG↓ | CF0 ATP synthase subunit II precursor | −1.8908 | 5.00E-05 | XLOC_052299↓ | 54.05 | 136.09 | −1.3323 | 0.00025 | |
XLOC_051836↑ | 5.42 | 3.53 | 0.6175 | 0.0108 | |||||
cytochrome b6-f complex | PETC↓ | rieske iron-sulfur subunit of the cytochrome b6f complex, chloroplast precursor | −2.4417 | 0.00005 | XLOC_057939↓ | 4.26 | 14.78 | −1.7937 | 5.00E-05 |
XLOC_058281↑ | 3.04 | 0.45 | 2.7454 | 0.00005 |
