Table 1 In vitro properties of purified NTnC compared to GCaMP6s.

From: A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites

 

Proteins

 

NTnC

GCaMP6s

Properties

apo

sat

apo

sat

Absorbance maximum (nm)

505

402

500

Emission maximum (nm)

518

518

515

Quantum yield a

0.71 ± 0.05

0.65 ± 0.04

0.11 ± 0.01

0.61

ε (mM−1 cm−1) b

108 ± 6

52 ± 1 c

33.3 ± 0.6

77 ± 3

Brightness (%)

163

72

7.8

100

Fluorescence contrast (fold)

0 mM Mg2+

2.0 ± 0.3

44 ± 6

1 mM Mg2+

2.0 ± 0.7

47 ± 24

pKa

6.09 ± 0.07

6.08 ± 0.02

9.6 ± 0.3

6.16 ± 0.08

Kd (nM)

0 mM Mg2+

84 ± 6 [n = 1.9 ± 0.1] d

144 ± 9 [n = 4.0 ± 0.6] d

1 mM Mg2+

192 ± 40

227.3 ± 0.2

Kdkin (nM) e

94 ± 9 [n = 2.3 ± 0.1]

152 ± 20 [n = 3.2 ± 0.1]

kon (s−1 × M−n) e

6 × 1015

6 × 1021

koff (s−1) f

0.8 ± 0.1; 0.05 ± 0.01 g

0.8 ± 0.1

konset limit (s−1) h

50 ± 20

270 ± 50

Protein state

monomer

monomer

Maturation half-time (min) i

23

28

ND

ND

Photobleaching half-time (sec) j

40 ± 8

70 ± 5

111 ± 15

186 ± 13

  1. aGCaMP6s in the saturated state (QY = 0.61 ref. 14) and mTagBFP2 (QY = 0.64 ref. 28) were used as reference standards for 500- to 505- and 402-nm absorbing states, respectively.
  2. bExtinction coefficient was determined by alkaline denaturation.
  3. cExtinction coefficient was estimated relative to apo NTnC with the same concentration.
  4. dHill coefficient is shown in square brackets.
  5. eKdkin, Hill coefficients and kon values were obtained via fitting the observed association rates (Supplementary Fig. 8a) at 0–350 nM Ca2+ concentrations to the equation kobs = kon × [Ca2+]n + koff (Fig. 2d). Kdkinetic = (koff/kon)1/n. Hill coefficients are shown in square brackets.
  6. fRefined koff values were determined from the dissociation kinetics records (Supplementary Fig. 8b).
  7. gUnlike GCaMP6s kinetics, NTnC kinetics do not agree with the two-state model. NTnC kinetic curves were fitted to double exponentials. koff values were estimated from double exponential decay with individual exponent contributions of 0.48:0.52.
  8. hkonset limit values are saturation levels of the observed association rates (at >600–800 nM Ca2+ concentrations; Supplementary Fig. 9).
  9. imEGFP had a maturation half-time of 14 min; we could not estimate the maturation rate for GCaMP6s because of its low expression level in bacteria.
  10. jmEGFP had a photobleaching half-time of 170 ± 20 sec.