Table 1 Transcriptome de novo Assembly Statistics of Calotropis procera.
Sample Name | C. procera | ||
|---|---|---|---|
Tool used | Velvet | Oases | Cd-hit-est |
Hash length | 59 | ||
Contigs Generated | 41549 | 53256 | 44074 |
Maximum Contig Length | 13530 | 15838 | 15838 |
Minimum Contig Length | 117 | 200 | 200 |
Average Contig Length | 730.4 | 1903.2 | 1785 |
Total Contigs Length | 30348668 | 101357782 | 78672233 |
Total Number of Non-ATGC Characters | 33422 | 87231 | 72447 |
Percentage of Non-ATGC Characters | 0.11 | 0.086 | 0.092 |
Contigs > 100 b | 41549 | 53256 | 44074 |
Contigs > 200 b | 29565 | 53256 | 44074 |
Contigs > 500 b | 17854 | 45454 | 36672 |
Contigs > 1 Kb | 10033 | 37786 | 29917 |
Contigs > 10 Kb | 7 | 73 | 45 |
N50 value | 1402 | 2574 | 2457 |
No. of Reads Used | 75530165 | 84423412 | 84423412 |
Total no. Of reads | 90598670 | 90598670 | 90598670 |
% of reads assembled | 83.36785 | 93.18 | 93.18 |
