Table 1 Top 20 diseases whose associated CRs are predicted to affect TAD.

From: 3Disease Browser: A Web server for integrating 3D genome and disease-associated chromosome rearrangement data

CR ID

Disease Name

CR Type

CR length

Gene

PubMed ID

SI Score (hESC)

FDR (SI score)

145620

Cleft palate

Deletion

3630934

CRYBB2

20466091

0.91

0.04%

145534

Anal atresia

Duplication

933288

GMDS-AS1

20466091

0.84

0.23%

59058

Arthrogryposis multiplex congenita

Duplication

840627

APOL4

21844811

0.84

0.25%

33260

Hearing impairment

Deletion

2641573

CLDN5

20466091

0.84

0.25%

59358

Attention deficit hyperactivity disorder

Deletion

2158318

INADL

21844811

0.83

0.29%

57809

Proteinuria

Deletion

4121281

AHSA1

21844811

0.83

0.29%

58696

Total anomalous pulmonary venous return

Duplication

6350820

KRT39

21844811

0.81

0.39%

155396

Tracheomalacia

Deletion

1865737

RGS14

20466091

0.80

0.54%

57591

Growth delay

Deletion

7912990

RFX4

21844811

0.79

0.58%

60244

Arachnoid cyst

Deletion

9625433

GTF2IRD2

21844811

0.78

0.65%

57341

Epispadias

Duplication

747247

MIR1243

21844811

0.77

0.80%

155202

Leukodystrophy

Deletion

1058291

GJA9-MYCBP

20466091

0.75

0.95%

153687

Sepsis

Deletion

5756016

DDX41

20466091

0.74

1.02%

57240

Ambiguous genitalia

Duplication

1500151

ATL2

21844811

0.72

1.16%

22234151

Polydactyly type 1

Duplication

926183

IHH

22234151

0.72

1.16%

25959774.1

F-syndrome Type 2

Inversion

1098179

WNT6

25959774

0.72

1.16%

18272352

Polydactyly

Deletion

623734

EPHA4

18272352

0.72

1.16%

57202

Pneumonia

Duplication

2914266

DGCR6

21844811

0.72

1.16%

33463

Microcephaly

Deletion

2734514

TXNRD2

20466091

0.72

1.16%

144137

Spina bifida occulta

Deletion

2785959

TTC3-AS1

20466091

0.70

1.43%

  1. CR ID: ID in 3Disease Browser. Gene is the candidate gene name affected by CR events. SI Score (hESC) is calculated using hESC cell line’s data.