Figure 3
From: Computational identification of putative lincRNAs in mouse embryonic stem cell
The comparison of sequence and epigenetic features between known lincRNAs and their neighbour protein coding transcripts.
(a) The palindrome distribution in the TSS proximal regions of known lincRNAs and their neighbouring protein coding transcripts. (b) The CGI coverage frequency in the TSS proximal regions of known lincRNAs and their neighbouring protein coding transcripts. (c) The repeat element frequency in the TSS proximal regions of known lincRNAs and their neighbouring protein coding transcripts, except for simple repeats, low complexity regions and satellite repeats. Shadow regions in (a–c) represent the 5–95% bootstrap confidence intervals of the statistics. (d) The over-represented and under-represented k-mers of known lincRNAs and their neighbouring protein coding transcripts. (e) The distribution of chromatin modifications in TSS proximal regions of known lincRNAs. (f) The distribution of chromatin modifications in TSS proximal regions of the protein coding transcripts closest to the known lincRNAs.
