Table 2 Comparison of predicted annotation results in three foxtail millet genome assemblies.
Annotation Category | TT8 | JGI 8x v2 Sitalica_164 | Millet_scaffoldVersion2.3 |
|---|---|---|---|
Predicted gene models | 44,292 | 40,599 (24,000–29,000) | 38,801 |
Sequence length of transcripts (Mbp) | 49 | 46 | 39 |
BLAST hits (nr) with 10−5 e-value cutoff | 33,897 | 34,901 | 32,042 |
BLAST hits (nr) with 10−10 e-value cutoff | 32,630 | 34,419 | 30,920 |
Avg. align. score among BLAST hits (nr) (10−5 e-value cutoff) | 529.8 | 620.6 | 539.8 |
Avg. align. score among BLAST hits (nr) (10−10 e-value cutoff) | 548.1 | 628.4 | 557.3 |
Pfam hits with 10−4 e-value cutoff | 39,098 | 28,012 | 24,004 |
Avg. e-value among Pfam hits | 1.51e-6 | 1.4e-6 | 1.49e-6 |
Unique GO terms | 1,962 | 1,304 | 1,164 |
Cellular Component terms | 259 | 150 | 148 |
Molecular Function terms | 895 | 665 | 587 |
Biological Process terms | 808 | 489 | 429 |
