Table 2 Distribution of positions with indels relative to R1, in at least one of the seven B. microti isolates and in the re-sequenced R1 isolatea.

From: Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

Isolate

Total count

Non-coding region

Coding region

Unique SNPs

Inter-genic

Intronic

5′ UTR 3′ UTR

SNP

Indel x3

Other

Unique ALT

Unique REF

R1

35(10)

24(4)

2(1)

0

5

4

0

3

103

ATCC_30222

211(6)

107(1)

58(1)

10(0)

4

17

15

15

0

ATCC_PRA-99

210(7)

111(3)

57(1)

9(0)

3

16

14

1

0

GI

208(5)

112(2)

55(1)

9(0)

2

16

14

6

0

Greenwich_Lab_Strain_1

169(4)

84(3)

47(0)

8(0)

1

14

15

12

6

Nan_Hs_2011_N11-50

221(10)

117(5)

56(1)

9(0)

4

22

13

16

0

Naushon

212(4)

114(1)

52(1)

9(0)

2

16

19

2

0

Bm1438

176(10)

95(4)

54(2)

9(0)

4

13

1

3

1

Total number of variable genomic positions

301

160

69

10

NV

28

34

58

110

  1. aThe table reports all genomic position where at least one strain contains an indel. Other isolates might present single point mutation (SNP) at the same position (shown in brackets). SNP counts were not included in the last row (Total number). NV: Not Valid. Indel x3: indels with length multiple of 3.
Back to article page