Table 2 KEGG pathways that are associated with the genes in the maximum-scoring sub network.
From: Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping
KEGG Pathway ID | Cumulative pathway score | Pathway name | Gene IDs |
|---|---|---|---|
cal00330 | 198.9823 | Arginine and proline metabolism | cal:CaO19.13487,AAT1,CBP1,AFP99,AFP98 |
cal00230 | 132.1469 | Purine metabolism | YND1, AMD1, CDC19, PRI1, DPB3, cal:CaO19.14031, |
cal00500 | 110.8155 | Starch and sucrose metabolism | GLK3, MAL2, GSY1, TPS2, GDB1, cal:CaO19.14031, XOG1 |
cal00410 | 104.9783 | beta-Alanine metabolism | cal:CaO19.13487, CBP1, AMO2 |
cal00250 | 59.83122 | Alanine, aspartate and glutamate metabolism | ASP1, AAT1, AGX1, GFA1, URA2 |
cal04146 | 56.56852 | Peroxisome | FAA21, CaJ7_0483, AGX1 |
cal03030 | 54.2462 | DNA replication | PRI1, DPB3 |
cal00071 | 54.03803 | Fatty acid degradation | FAA21, CaJ7_0483, cal:CaO19.13487, SAD1 |
cal00061 | 43.38386 | Fatty acid biosynthesis | FAA21, CaJ7_0483, ACC1, FAS1 |
cal00350 | 42.3465 | Tyrosine metabolism | AAT1, SAD1, AMO2 |
cal00360 | 39.59607 | Phenylalanine metabolism | AAT1, AMO2 |
cal00400 | 36.1654 | Phenylalanine, tyrosine and tryptophan biosynthesis | AAT1 |
cal00270 | 28.13576 | Cysteine and methionine metabolism | AAT1, MDH2 |
cal00520 | 24.9472 | Amino sugar and nucleotide sugar metabolism | GLK3, GFA1, cal:CaO19.14031 |
cal00240 | 23.8103 | Pyrimidine metabolism | YND1, PRI1, DPB3, URA2 |
cal00564 | 21.70483 | Glycerophospholipid metabolism | PSD1, CHO1, OPI3, CRD1, cal:CaO19.12881 |
cal00030 | 20.34725 | Pentose phosphate pathway | RKI1, PFK2, cal:CaO19.14031 |
cal00460 | 12.2906 | Cyanoamino acid metabolism | ASP1 |
cal03420 | 11.9899 | Nucleotide excision repair | DPB3 |
cal03410 | 11.9899 | Base excision repair | DPB3 |
cal03018 | 2.67299 | RNA degradation | PFK2 |
cal00051 | −2.79647 | Fructose and mannose metabolism | GLK3, PFK2 |
cal00561 | −5.29207 | Glycerolipid metabolism | cal:CaO19.13487, cal:CaO19.12881, TGL2 |
cal00020 | −8.02964 | Citrate cycle (TCA cycle) | MDH2 |
cal00565 | −8.28607 | Ether lipid metabolism | cal:CaO19.12881 |
cal00100 | −8.28607 | Steroid biosynthesis | cal:CaO19.12881 |
cal00590 | −8.28607 | Arachidonic acid metabolism | cal:CaO19.12881 |
cal00592 | −8.28607 | alpha-Linolenic acid metabolism | cal:CaO19.12881 |
cal00260 | −9.61059 | Glycine, serine and threonine metabolism | CHO1, AGX1, AMO2 |
cal00640 | −15.0766 | Propanoate metabolism | ACS1, ACC1 |
cal00040 | −15.1134 | Pentose and glucuronate interconversions | cal:CaO19.13487 |
cal00280 | −15.1134 | Valine, leucine and isoleucine degradation | cal:CaO19.13487 |
cal00053 | −15.1134 | Ascorbate and aldarate metabolism | cal:CaO19.13487 |
cal00340 | −15.1134 | Histidine metabolism | cal:CaO19.13487 |
cal00310 | −15.1134 | Lysine degradation | cal:CaO19.13487 |
cal00380 | −15.1134 | Tryptophan metabolism | cal:CaO19.13487 |
cal00680 | −16.4076 | Methane metabolism | ACS1, AGX1, PFK2 |
cal00052 | −24.6707 | Galactose metabolism | GLK3, MAL2, PFK2, cal:CaO19.14031 |
cal00630 | −32.8304 | Glyoxylate and dicarboxylate metabolism | MDH2, AGX1, MLS1 |
cal00010 | −36.1765 | Glycolysis/Gluconeogenesis | GLK3, ACS1, cal:CaO19.13487, CDC19, SAD1, PFK2, cal:CaO19.14031 |
cal00620 | −59.867 | Pyruvate metabolism | ACS1, cal:CaO19.13487, ACC1, CDC19, MDH2, MAE1, MLS1 |
