Table 2 Metagenome assembly statistics.
Assembler | Contigs | Max contig length (bp) | Contigs longer than 1500 bp | N50 (min 1500 bp) | Reads mapping to contigs longer than 1500 bp (%) | Year |
|---|---|---|---|---|---|---|
metaSPADES | 2.9 × 106 | 241 837 | 6.1 × 104 | 2636 | 19.9 | 2013 |
metaSPADES | 5.6 × 105 | 13 970 | 3.7 × 103 | 1997 | 3.6 | 2009 |
metaSPADES | 5.1 × 105 | 11 779 | 1.6 × 103 | 2061 | 1.7 | 2006 |
MEGAHIT | 3.1 × 106 | 38 991 | 6.3 × 104 | 2297 | 20.4 | 2013 |
MEGAHIT | 5.8 × 105 | 13 953 | 1.0 × 104 | 2015 | 5.8 | 2009 |
MEGAHIT | 5.3 × 105 | 12 057 | 6.4 × 103 | 1908 | 2.6 | 2006 |
IDBA-UD | 1.3 × 106 | 79 435 | 1.0 × 105 | 2622 | 22.7 | 2013 |
IDBA-UD | 1.8 × 105 | 13 045 | 6.8 × 103 | 2188 | 5.4 | 2009 |
IDBA-UD | 1.3 × 105 | 10 326 | 3.3 × 103 | 2165 | 2.9 | 2006 |
