Table 1 Summary and annotation of SNPs in Enshi black pigs and Chines wild boar.

From: Genomic analysis reveals selection in Chinese native black pig

Number of SNPs

Category

LCP

YTL

ZBZ

ES

Wild boar

3’UTR

54,883

55,078

55,961

44,505

52,282

Intergenic

9,925,783

9,934,711

10,260,959

7,823,054

10,327,917

Splicing

402

421

430

351

392

Upstream

115,480

115,907

117,787

93,785

108,071

Exonic

 Stop gain

231

231

244

183

221

 Nonsynonymous

30,849

30,819

31,005

25,595

26,568

 Unknown

1,325

1,312

1,352

1,133

1,149

 Synonymous

60,015

60,094

60,111

50,161

52,160

 Stop loss

43

42

44

38

41

Downstream

113,563

113,845

116,124

90,862

110,907

5’UTR

11,869

12,041

11,920

10,034

8,700

Intronic

3,554,718

3,553,004

3,642,593

2,823,962

3,569,327

  1. The package ANNOVAR was used to identify whether a SNP causes protein coding changes and the amino acids that are affected. LCP, Lvcongpo population; YTL, Yetinglu population; ZBZ, Zhongbaozhen population; Wild boar, Chinese wild boar population; ES, shared in three Enshi pig populations.
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