Table 4 Results of the recombination analyses performed with the aligned sequences of avian orthoreoviruses of gallinaceous birds available from GenBank applying recombination detection program RDP v.3.44.
Segment (gene) | Recombinant strain | Parent major /minor | Regions derived from minor parent | Model | Recombinant score | Possibility (MC corrected) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
RDP Av. P-Val | GENECONV Av. P-Val | BootScan Av. P-Val | MaxChi Av. P-Val | Chimera Av. P-Val | SiScan Av. P-Val | 3Seq Val | ||||||
L1 (λA) | T6 | GX110058/916 | 1–566 3858–3882 | — | 1,598 × 10−42 | 5,005 × 10−45 | 1,772 × 10−15 | 1,767 × 10−15 | 2,011 × 10−16 | 9,294 × 10−56 | 0.685 | 9,294 E-56 |
OS161 | 601 G/GX110116 | 444–1162 | 3,075 × 10−36 | 7,945 × 10−39 | 1,766 × 10−38 | 6,930 × 10−10 | 9,081 × 10−15 | 9,528 × 10−24 | 1,766 × 10−19 | 0.744 | Global KA P-value 7,945 E-39 | |
L2 (λC) | 918 | GuangxiR2/916 | 2816–3830 | 2,209 × 10−93 | 6,072 × 10−88 | 1,698 × 10−93 | 3,520 × 10−30 | 1,704 × 10−30 | 4,473 × 10−38 | 2,768 × 10−131 | 0.758 | 2,768 E-131 |
TERV-MN6 | TERV-MN2/TARV-MN13 | 498–2186 | 1,040 × 10−10 | 5,952 × 10−04 | 1,158 × 10−09 | 3,224 × 10−16 | 2,885 × 10−18 | 3,279 × 10−13 | 4,456 × 10−32 | 0.749 | 4,456 E-32 | |
601 G | 16821-M-06/GuangxiR2 | 1–2820 3836–3859 | 5,725 × 10−35 | 1,850 × 10−29 | 3,234 × 10−46 | 1,380 × 10−25 | 3,144 × 10−15 | 3,080 × 10−64 | 1,323 × 10−11 | 0.602 | 3,234 E-46 | |
M1 (μA) | 176 | 138/T-98 | 260–1998 | — | — | 5,043 × 10−06 | 3,015 × 10−05 | 1,524 × 10−05 | 2,966 × 10−32 | 8,862 × 10−20 | 0.666 | 8,862 E-20 |
TERV-MN6 | TERV-MN2/TERV-MN3 | 1498–2152 | 6,493 × 10−08 | 2,853 × 10−10 | 2,159 × 10−13 | 4,322 × 10-08 | 3,671 × 10-08 | 8,321 × 10−12 | 3,855 × 10−11 | 0.694 | Binomial probability 2,159 E-13 | |
TARV-MN7 | TARV-MN11/TARV-Crestview | 1–700 1358–1965 | — | — | 1,029 × 10−03 | 2,714 × 10−05 | 2,583 × 10-05 | 1,945 × 10−11 | — | 0.711 | Region probability 2,583 E-05 | |
M2 (μB) | 176 | 138/GuangxiR2 | 286–1825 | 2,327 × 10−14 | 5,954 × 10−12 | 9,800 × 10−13 | 8,389 × 10−14 | 9,913 × 10−14 | 1,709 × 10−37 | 3,861 × 10−46 | 0.744 | 3,861 E-46 |
M3 (μNS) | 176 | 138/C-78 | 1–1691 1877–1909 | — | — | — | 6,570 × 10−03 | 5,519 × 10−03 | 1,536 × 10−25 | 1,226 × 10−11 | 0.513 | Possible misidentification of recombinant |
T6 | OS161/1733 | 1–568 1636–1909 | 5,611 × 10-07 | 1,227 × 10−04 | 2,679 × 10−09 | 8,611 × 10−09 | 1,345 × 10−06 | 2,024 × 10−08 | — | 0.673 | 2,679 E-09 | |
S2 (σA) | 918 | 1017-1/GX/2010/1 | 1–1023 1222–1252 | 4,427 × 10−03 | — | 4,471 × 10−03 | 6,956 × 10-06 | 3,864 × 10−04 | 1,206 × 10−25 | 4,603 × 10−14 | 0.749 | 4,603 E-14 |
