Table 1 Characteristics of candidate reference genes.
Gene ID | Gene abbreviation | Mean raw fragments | Standard Deviation (SD) | Coefficient of variation (CV) | Swissprot annotation |
|---|---|---|---|---|---|
CL10201.Contig1_All | LbCYP | 1142.214286 | 718.6318388 | 0.62915676 | Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS = Arabidopsis thaliana GN = CYP20-2 PE = 1 SV = 1 |
CL1082.Contig3_All | LbTBP | 138.5714286 | 38.5141618 | 0.27793725 | TATA-box-binding protein OS = Solanum tuberosum GN = TBP PE = 2 SV = 1 |
Unigene36249_All | LbGAPDH | 145.4285714 | 68.28527748 | 0.46954513 | Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS = Arabidopsis thaliana GN = GAPC1 PE = 1 SV = 2 |
CL13903.Contig10_All | LbTUB | 57.57142857 | 57.88412069 | 1.005431377 | Tubulin beta-2 chain OS = Solanum tuberosum GN = TUBB2 PE = 2 SV = 1 |
CL2539.Contig4_All | LbEF1α | 3196.071429 | 823.6067456 | 0.257693473 | Elongation factor 1-alpha OS = Solanum lycopersicum PE = 2 SV = 1 |
CL4826.Contig3_All | LbActin7 | 626.5714286 | 191.7922411 | 0.306097968 | Actin-7 OS = Arabidopsis thaliana GN = ACT7 PE = 1 SV = 1 |
Unigene44516_All | LbHSP90 | 126.0714286 | 53.97501457 | 0.428130427 | Heat shock protein 90–2 OS = Arabidopsis thaliana GN = HSP90-2 PE = 1 SV = 1 |
CL13810.Contig1_All | LbHIS3 | 2307.928571 | 612.946536 | 0.265582975 | Histone H3.3 OS = Vitis vinifera PE = 2 SV = 3 |
CL10058.Contig1_All | LbCYC | 1009 | 92.22297394 | 0.091400371 | Cyclin-B1-5 OS = Arabidopsis thaliana GN = CYCB1-5 PE = 2 SV = 3 |
Unigene55248_All | LbEIF4A | 2087.928571 | 165.8161467 | 0.07941658 | Eukaryotic initiation factor 4A-3 OS = Nicotiana plumbaginifolia PE = 2 SV = 1 |
Unigene19346_All | LbPP2A | 831.8571429 | 99.63923937 | 0.119779268 | Serine/threonine-protein phosphatase PP2A catalytic subunit OS = Nicotiana tabacum PE = 2 SV = 1 |
CL11175.Contig21_All | LbUBQ | 1211.428571 | 186.5371542 | 0.153981141 | Polyubiquitin 10 OS = Arabidopsis thaliana GN = UBQ10 PE = 1 SV = 2 |
Unigene15131_All | LbCML38 | 695 | 106.1066227 | 0.1526714 | Calcium-binding protein CML38 OS = Arabidopsis thaliana GN = CML38 PE = 2 SV = 1 |
CL7969.Contig1_All | LbLEA | 525.7142857 | 113.3995174 | 0.215705604 | Late embryogenesis abundant protein Lea14-A OS = Gossypium hirsutum GN = LEA14-A PE = 2 SV = 1 |
Unigene31075_All | LbEF1β | 5663 | 1138.411849 | 0.201026285 | Elongation factor 1-beta OS = Oryza sativa subsp. japonica GN = Os07g0662500 PE = 1 SV = 3 |
Unigene26461_All | LbSKIP | 612.5 | 120.2361459 | 0.196303912 | F-box protein SKIP31 OS = Arabidopsis thaliana GN = SKIP31 PE = 1 SV = 1 |
Unigene55138_All | LbRH52 | 950.4285714 | 113.8816621 | 0.119821379 | DEAD-box ATP-dependent RNA helicase 52 OS = Arabidopsis thaliana GN = RH52 PE = 2 SV = 1 |
Unigene59903_All | LbRPL7A | 793.6428571 | 149.1166849 | 0.187888902 | 60S ribosomal protein L7-1 OS = Arabidopsis thaliana GN = RPL7A PE = 2 SV = 1 |
Unigene59939_All | LbMYB1 | 2982.571429 | 697.3143085 | 0.233796348 | Transcription factor MYB1R1 OS = Solanum tuberosum PE = 2 SV = 1 |
