Table 2 Subline variant screen.

From: Inter-laboratory evolution of a model organism and its epistatic effects on mutagenesis screens

Subline

Position

ORF

Nt change

AA change

TIGR annotation

S1

2678143

Nc

C → A

  
 

3849765

Nc

G → T

  
 

5766255

MXAN4601

G → C

G408R

non-ribosomal peptide synthase

 

5964097

MXAN4762

C → A

G102C

6,7-dimethyl-8-ribityllumazine synthase

 

6146569

MXAN4912

G → A

Syn

hypothetical protein

 

8023083

MXAN6505

C → A

Syn

sulfate permease

 

9009601

MXAN7384

T → A

Syn

conserved hypothetical protein

 

9089098

MXAN7464

C → A

Syn

hypothetical protein

S2, S4

3591006

MXAN3061

T → C

V140A

α-L-glutamate ligases, RimK family

 

5591111

MXAN4513

G → T

L837I

conserved hypothetical protein

S3

1717943

MXAN1458

G → T

Syn

THUMP domain/methyltransferase domain protein

 

2304200

MXAN1970

T → Δ

L72Fs

transcriptional regulator, ArsR family

 

4545964

MXAN3780

G →T

Syn

patatin-like phospholipase family protein

 

5258697

MXAN4292

G → C

Q654E

polyketide synthase

 

5391338

MXAN4388

G → A

T199M

D-lysine 5,6-aminomutase, α subunit

 

5893144

Nc

A → C

  
 

6287570

Nc

C → A

  
 

8333625

MXAN6783

G → A

Syn

decarboxylase, group II

S5

2727430

Nc

C → G

  
 

3591006

MXAN3061

T → C

V140A

α-L-glutamate ligases, RimK family

 

5591111

MXAN4513

G → T

L837I

conserved hypothetical protein

 

6423875

MXAN5143

C → T

Syn

tol-pal system protein YbgF

 

6465733

MXAN5175

T → G

B139A

hypothetical protein

 

8966988

Nc

T → C

  

S6

1523890

MXAN1297

C → A

R288S

putative serine/threonine protein kinase

 

1985177

Nc

G → T

  

S7

2310245

Nc

C → G

  

S8

3591006

MXAN3061

T → C

V140A

α-L-glutamate ligases, RimK family

 

4880522

MXAN4000

G → T

Syn

non-ribosomal peptide synthetase

 

5180405

MXAN4219

G → A

Syn

α keto acid dehydrogenase complex

 

5591111

MXAN4513

G → T

L837I

conserved hypothetical protein

S9

8617589

MXAN7041

C → G

A80P

cyclic nucleotide-binding domain protein

 

8617592

MXAN7041

C → T

V79M

cyclic nucleotide-binding domain protein

  1. Nt, nucleotide; Nc, noncoding; AA, amino acid; Δ, deletion; Syn, synonymous; Fs, frameshift.
  2. Sublines S2 and S4 are listed together because they have identical variants.