Table 1 Summary of the sequencing data and de novo sequence assembly of Oryza meyeriana transcriptome in response to Xanthomonas oryzae pv. oryzae infection.
Sample | Raw data | Clean data | ||||
|---|---|---|---|---|---|---|
Reads | Gb | Reads | Gb | Assembly statistics | ||
CO1 | 76,825,162 | 7.68 | 71,699,288 | 7.17 | Total no. of contigs | 210,601 |
CO2 | 69,922,902 | 6.99 | 64,185,172 | 6.42 | No. of contigs with ORF | 97,596 |
CO3 | 77,747,124 | 7.77 | 70,430,752 | 7.04 | No. of unitranscritpts with ORF | 57,313 |
TE1 | 79,450,850 | 7.94 | 72,647,958 | 7.26 | Total size (Mb) | 151.1 |
TE2 | 66,303,800 | 6.63 | 59,980,114 | 5.99 | Maximum length (bp) | 18,852 |
TE3 | 76,413,118 | 7.64 | 69,886,360 | 6.99 | Average length (bp) | 2,637 |
TO1 | 59,733,550 | 5.97 | 53,460,904 | 5.34 | N50 length (bp) | 3,123 |
TO2 | 70,975,938 | 7.09 | 63,882,078 | 6.39 | Contigs with hits in NR | 55,671 |
TO3 | 66,307,936 | 6.63 | 61,474,994 | 6.15 | Differentially expressed unitranscripts | 14,143 |
Total | 643,680,380 | 64.4 | 587,647,620 | 58.7 | ||
