Table 2 The common DRGs identified between comparisons.

From: Global DNA methylation variations after short-term heat shock treatment in cultured microspores of Brassica napus cv. Topas

Comparisons	TD^a	DRG Locus	From	MDD^b	DDT^c	S^d	SAL^e	Description (TIGR)
T32 vs. T18 & T32 vs. T0	CG hypo-DRGs	BnaA02g21500D	T32 vs. T18	−31.31	0	+	AT4G22758	unknown protein
		BnaA02g21500D	T32 vs. T0	−30.94	0	+	AT4G22758	unknown protein
		BnaA03g39290D	T32 vs. T18	−37.09	−138	+	AT2G16740	ubiquitin-conjugating enzyme 29 (UBC29)
		BnaA03g39290D	T32 vs. T0	−36.11	−138	+	AT2G16740	ubiquitin-conjugating enzyme 29 (UBC29)
		BnaA03g54520D	T32 vs. T18	−30.61	0	−	AT4G04090	BTB/POZ domain-containing protein
		BnaA03g54520D	T32 vs. T0	−27.20	0	−	AT4G04090	BTB/POZ domain-containing protein
		BnaA04g24700D	T32 vs. T18	−39.49	−1873	−	AT2G42840	protodermal factor 1 (PDF1)
		BnaA04g24700D	T32 vs. T0	−35.25	−1873	−	AT2G42840	protodermal factor 1 (PDF1)
		BnaC03g23920D	T32 vs. T18	−36.65	−110	−	ATCG00190	RNA polymerase subunit beta, RPOB
		BnaC03g23920D	T32 vs. T0	−28.17	−110	−	ATCG00190	RNA polymerase subunit beta, RPOB
		BnaC08g29000D	T32 vs. T18	−47.18	−1363	−	AT3G58120	BZIP transcription factor 61 (BZIP61)
		BnaC08g29000D	T32 vs. T0	−38.19	−1363	−	AT3G58120	BZIP transcription factor 61 (BZIP61)
		BnaC09g13630D	T32 vs. T18	−30.31	0	−	NA^f	NA
		BnaC09g13630D	T32 vs. T0	−25.65	0	−	NA^f	NA
	CHG hypo-DRGs	BnaA02g16440D	T32 vs. T18	−26.83	−1324	+	NA	NA
		BnaA02g16440D	T32 vs. T0	−27.68	−1324	+	NA	NA
		BnaA06g03030D	T32 vs. T18	−27.65	−975	−	AT1G49710	fucosyltransferase 12 (FUT12)
		BnaA06g03030D	T32 vs. T0	−33.45	−975	−	AT1G49710	fucosyltransferase 12 (FUT12)
		BnaC01g24140D	T32 vs. T18	−34.33	−1673	−	AT3G45040	dolichol kinase 1 (DOK1)
		BnaC01g24140D	T32 vs. T0	−28.92	−1673	−	AT3G45040	dolichol kinase 1 (DOK1)
		BnaC03g31070D	T32 vs. T18	−38.24	−1693	−	AT4G02110	transcription coactivators
		BnaC03g31070D	T32 vs. T0	−54.76	−1693	−	AT4G02110	transcription coactivators
		BnaC06g31320D	T32 vs. T18	−27.14	−1585	+	AT1G70230	altered xyloglucan 4 (AXY4)
		BnaC06g31320D	T32 vs. T0	−29.29	−1585	+	AT1G70230	altered xyloglucan 4 (AXY4)
T32 vs. T0 & T18 vs. T0	CG hypo-DRGs	BnaA02g21210D	T18 vs. T0	−49.26	0	−	NA	NA
			T32 vs. T0	−48.31	0
				−43.61	−66
		BnaA03g36810D	T18 vs. T0	−29.68	9	−	AT3G22840	early light-inducible protein 1 (ELIP1)
		BnaA03g36810D	T32 vs. T0	−33.98	1009	−	AT3G22840	early light-inducible protein 1 (ELIP1)
		BnaC03g43830D	T18 vs. T0	−31.55	383	−	NA	NA
		BnaC03g43830D	T32 vs. T0	−29.22	383	−	NA	NA
	CG hyper-DRGs	BnaC03g57230D	T18 vs. T0	35.03	1399	−	AT3G43610	Spc97/Spc98 family of spindle pole body (SBP) component
	CG hyper-DRGs	BnaC03g57230D	T32 vs. T0	37.62	1399	−	AT3G43610	Spc97/Spc98 family of spindle pole body (SBP) component
T32 vs. T18 & T18 vs. T0	CG DRGs	BnaA03g17310D	T32 vs. T18	32.38	51	−	AT2G37600	ribosomal protein L36e family protein
		BnaA03g17310D	T18 vs. T0	−29.80	51	−	AT2G37600	ribosomal protein L36e family protein
		BnaA03g24920D	T32 vs. T18	−30.84	−382	−	AT4G11960	proton gradient regulation 5-like 1B (PGRL1B)
		BnaA03g24920D	T18 vs. T0	37.52	−382	−	AT4G11960	proton gradient regulation 5-like 1B (PGRL1B)
		BnaA03g38010D	T32 vs. T18	30.91	0	+	AT2G05160	CCCH-type zinc finger family protein with RNA-binding domain
		BnaA03g38010D	T18 vs. T0	−32.58	0	+	AT2G05160
		BnaA04g16720D	T32 vs. T18	40.20	−1291	−	AT2G28830	plant U-box 12 (PUB12)
		BnaA04g16720D	T18 vs. T0	−26.29	−1291	−	AT2G28830	plant U-box 12 (PUB12)
		BnaC05g34070D	T32 vs. T18	25.39	0	−	NA	NA
		BnaC05g34070D	T18 vs. T0	−27.71	0	−	NA	NA
	CHH DRGs	BnaC05g07550D	T32 vs. T18	−32.10	640	−	AT1G10200	ATWLIM1
		BnaC05g07550D	T18 vs. T0	35.71	640	−	AT1G10200	ATWLIM1
		BnaC07g43260D	T32 vs. T18	64.58	−152	+	AT4G31340	myosin heavy chain-related
		BnaC07g43260D	T18 vs. T0	−32.49	−152	+	AT4G31340	myosin heavy chain-related

^aTD, type of DRG.
^bMDD, meth.diff of the DMR.
^cDDT, distance from DMR to transcriptional start site.
^dS, strand.
^eSAL, similar to Arabidopsis locus.
^fNA, no available.

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Table 2 The common DRGs identified between comparisons.

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