Table 1 List (with details) of top 20 known miRNAs and three potential-new miRNA and seven potential-candidate miRNAs that were detected in hAMSCs-CM derived exosomes.
Known miRNA | ||||||||
---|---|---|---|---|---|---|---|---|
miRNA | Precursor | Sequence | Precursor Description | miRBase | ENTREZGENE | Sample 1 | Sample 2 | Sample 3 |
hsa-miR-4792 | hsa-mir-4792 | cggugagcgcucgcuggc | Homo sapiens miR-4792 stem-loop | miRBase:hsa-miR-4792 | ENTREZGENE:100616448 | 361010 | 381745 | 381918 |
hsa-miR-320b | hsa-mir-320b-1,hsa-mir-320b-2 | aaaagcuggguugagagggcaa | Homo sapiens miR-320b-1 stem-loop,Homo sapiens miR-320b-2 stem-loop | miRBase:hsa-miR-320b | ENTREZGENE: 100313823 | 2628 | 2094 | 2046 |
hsa-miR-320a | hsa-mir-320a | aaaagcuggguugagagggcga | Homo sapiens miR-320a stem-loop | miRBase:hsa-miR-320a | ENTREZGENE: 407037 | 1645 | 1311 | 1293 |
hsa-miR-7704 | hsa-mir-7704 | cggggucggcggcgacgug | Homo sapiens miR-7704 stem-loop | miRBase:hsa-miR-7704 | Â | 1470 | 971 | 1145 |
hsa-miR-127-3p | hsa-mir-127 | ucggauccgucugagcuuggcu | Homo sapiens miR-127 stem-loop | miRBase:hsa-miR-127-3p | ENTREZGENE: 406914 | 943 | 836 | 807 |
hsa-miR-6087 | hsa-mir-6087 | ugaggcgggggggcgagc | Homo sapiens miR-6087 stem-loop | miRBase:hsa-miR-6087 | Â | 783 | 831 | 885 |
hsa-miR-22-3p | hsa-mir-22 | aagcugccaguugaagaacugu | Homo sapiens miR-22 stem-loop | miRBase:hsa-miR-22-3p | ENTREZGENE:407004 | 772 | 638 | 671 |
hsa-miR-4466 | hsa-mir-4466 | gggugcgggccggcgggg | Homo sapiens miR-4466 stem-loop | miRBase:hsa-miR-4466 | ENTREZGENE:100616154 | 459 | 541 | 618 |
hsa-miR-486-5p | hsa-mir-486-1,hsa-mir-486-2 | uccuguacugagcugccccgag | Homo sapiens miR-486 stem-loop,Homo sapiens miR-486-2 stem-loop | miRBase:hsa-miR-486-5p | ENTREZGENE:619554 | 581 | 529 | 453 |
hsa-miR-4532 | hsa-mir-4532 | ccccggggagcccggcg | Homo sapiens miR-4532 stem-loop | miRBase:hsa-miR-4532 | ENTREZGENE:100616353 | 449 | 449 | 625 |
hsa-miR-7641 | hsa-mir-7641-1,hsa-mir-7641-2 | uugaucucggaagcuaagc | Homo sapiens miR-7641-1 stem-loop,Homo sapiens miR-7641-2 stem-loop | miRBase:hsa-miR-7641 | Â | 518 | 490 | 428 |
hsa-miR-423-5p | hsa-mir-423 | ugaggggcagagagcgagacuuu | Homo sapiens miR-423 stem-loop | miRBase:hsa-miR-423-5p | ENTREZGENE:494335 | 328 | 273 | 273 |
hsa-miR-181a-5p | hsa-mir-181a-1,hsa-mir-181a-2 | aacauucaacgcugucggugagu | Homo sapiens miR-181a-1 stem-loop,Homo sapiens miR-181a-2 stem-loop | miRBase:hsa-miR-181a-5p | ENTREZGENE:406954 | 226 | 224 | 130 |
hsa-miR-4448 | hsa-mir-4448 | ggcuccuuggucuaggggua | Homo sapiens miR-4448 stem-loop | miRBase:hsa-miR-4448 | ENTREZGENE:100616127 | 232 | 144 | 137 |
hsa-miR-423-3p | hsa-mir-423 | agcucggucugaggccccucagu | Homo sapiens miR-423 stem-loop | miRBase:hsa-miR-423-3p | ENTREZGENE:494335 | 195 | 143 | 155 |
hsa-miR-3960 | hsa-mir-3960 | ggcggcggcggaggcggggg | Homo sapiens miR-3960 stem-loop | miRBase:hsa-miR-3960 | ENTREZGENE:100616250 | 134 | 105 | 148 |
hsa-miR-1246 | hsa-mir-1246 | aauggauuuuuggagcagg | Homo sapiens miR-1246 stem-loop | miRBase:hsa-miR-1246 | ENTREZGENE:100302142 | 122 | 104 | 128 |
hsa-miR-26a-5p | hsa-mir-26a-1,hsa-mir-26a-2 | uucaaguaauccaggauaggcu | Homo sapiens miR-26a-1 stem-loop,Homo sapiens miR-26a-2 stem-loop | miRBase:hsa-miR-26a-5p | ENTREZGENE:407015 | 146 | 110 | 74 |
hsa-miR-378a-3p | hsa-mir-378a | acuggacuuggagucagaaggc | Homo sapiens miR-378a stem-loop | miRBase:hsa-miR-378a-3p | ENTREZGENE:494327 | 93 | 113 | 96 |
hsa-miR-3687 | hsa-mir-3687-1,hsa-mir-3687-2 | cccggacaggcguucgugcgacgu | Homo sapiens miR-3687-1 stem-loop,Homo sapiens miR-3687-2 stem-loop | miRBase:hsa-miR-3687 | ENTREZGENE:100500815 | 104 | 70 | 84 |
Potential New-miRNAs | ||||||||
Probitional miRNA_Id | Mature Sequence | Precursor Sequence | Mature Length (nt) | Chr No. | Start | End | Precursor Length(nt) | |
chr12:109181601-109181645 | agaggaggagaagaaacu | uaacuuuuccccuacucuugccauagagaggaggagaagaaacu | 18 | chr12 | 109181601 | 109181645 | 45 | |
chr7:148638583-148638650 | ccccacaaccgcgcuugacu | gguccgaguguuguggguuauuguuaaguugauuuaacauugucuccccccacaaccgcgcuugacu | 20 | chr7 | 148638583 | 148638650 | 68 | |
Chr16:73092094-73092157 | ggcggcggcggcggcggc | ggcggcggcggcgcggggccggggaggagggggcggcccgggcucggcggcggcggcggcggc | 18 | Chr16 | 73092094 | 73092157 | 64 | |
Expected Candidate-miRNAs | ||||||||
chr8:56821963-56822004 | gugggauuaugacugaac | gugggauuaugacugaacauguccaagucagaaucccacuc | 18 | chr8 | 56821963 | 56822004 | 42 | |
chr6:28678365-28678429 | ggggguguagcucaguggu | ggggguguagcucagugguagagcgcgugcuuagcaugcacgaggcccuggguucaauccccag | 19 | chr6 | 28678365 | 28678429 | 65 | |
chr6:28726148-28726212 | ggggguguagcucaguggu | ggggguguagcucagugguagagcacaugcuuugcaugugugaggccccggguucgauccccgg | 19 | chr6 | 28726148 | 28726212 | 65 | |
chr20:36065457-36065499 | gagaguuugauccuggcuc | guggggguggggguaggaggauggagaguuugauccuggcuc | 19 | chr20 | 36065457 | 36065499 | 43 | |
chr20:61801606-61801662 | gcauccuggggcuggaga | gcauccuggggcuggagagguugaggcugccaccccuccagaccagagggaugugg | 18 | chr20 | 61801606 | 61801662 | 57 | |
chrY:10035763-10035818 | agaggugaaauucuuggac | aagagggauggcugggggcauucguauugugccacuagaggugaaauucuuggac | 19 | chrY | 10035763 | 10035868 | 106 | |
chr11:122928783-122928833 | cuuccuuggaugucugagugac | caccagaauucaagguguuggcaacuaccuuccuuggaugucugagugac | 22 | chr11 | 122928783 | 122928833 | 51 |