Table 1 Statistic of SLAF sequencing data and high-quality marker depths.
Sample | Raw reads (bp) | Q30 percentage (%) | GC percentage (%) | SLAF number | Total reads number | Average depth |
---|---|---|---|---|---|---|
Female parent | 6,855,402 | 87.13 | 44.39 | 194,887 | 5,771,500 | 29.61× |
Male parent | 7,192,892 | 86.32 | 44.48 | 200,452 | 6,360,679 | 31.73× |
Average in progeny | 745,247 | 86.39 | 44.43 | 107,758 | 345,020 | 3.15× |
Total | 123,599,603 | 85.82 | 44.43 | 235,619 | / | / |