Table 2 Variations at exonic regions of each mitochondrial gene among 11 C. militaris strains.

From: Comparative mitochondrial genomics toward exploring molecular markers in the medicinal fungus Cordyceps militaris

Gene

Exon

Protein

Length (bp)

Pi

S

Indel

Total

%

Length (aa)

Pi

S

Indel

Total

atp6

783

1

3

0

4

0.5

260

0

0

0

0

atp8

147

0

0

0

0

0.0

48

0

0

0

0

atp9

225

0

0

0

0

0.0

74

0

0

0

0

cob

1161

6

6

0

12

1.0

386

0

0

0

0

cox1

1593

4

7

0

11

0.7

530

0

0

0

0

cox2

750

7

2

0

9

1.2

249

0

0

0

0

cox3

810

5

7

0

12

1.5

269

1

0

0

1

nad1

1104

3

4

0

7

0.6

367

0

0

0

0

nad2

1686

4

8

0

12

0.7

561

1

4

0

5

nad3

420

1

0

0

1

0.2

139

0

0

0

0

nad4

1449

2

9

0

11

0.8

482

2

1

0

3

nad4L

270

3

0

0

3

1.1

89

0

0

0

0

nad5

1995

12

12

0

24

1.2

664

1

1

0

2

nad6

633

0

0

0

0

0.0

210

0

0

0

0

rns

1538–1558

3

1

23

27

1.7

     

rnl

3120–3189

4

3

75

82

2.6

     

tRNA-Leu (TAA)

82

1

0

0

1

1.2

     

tRNA-Phe (GAA)

73

0

1

0

1

1.4

     

tRNA-Lys (TTT)

73

0

1

0

1

1.4

     

tRNA-Gln (TTG)

73

1

0

0

1

1.4

     

tRNA-His (GTG)

73

0

1

0

1

1.4

     

tRNA-Arg (ACG)

71

1

0

0

1

1.4

     

tRNA-Arg (CCT)

71

0

1

0

1

1.4

     

Other 20 tRNAs

1481

0

0

0

0

0.0

     

Total

19681–19770

58

66

98

222

1.1

4328

5

6

0

11

  1. Pi, parsimony informative sites; S, singleton sites; indel, insertion/deletion sites; %, the percentage of total variable sites (Pi, S, and indels) in each gene.
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