Table 4 Variations at intergenic regions of mitochondrial genes among 11 C. militaris strains.

From: Comparative mitochondrial genomics toward exploring molecular markers in the medicinal fungus Cordyceps militaris

Intergenic region a

No. strains

Actual length (bp)

Remaining length (bp) c

Pi

S

Indel

Total

% c

Note

rnl-nad2

11

1056–1065

166–175

4

0

9

13

7.6

12 tRNAs excluded

nad3-atp9

11

278–286

278–286

3

3

8

14

4.9

 

atp9-cox2

11

176–186

176–186

7

2

10

19

10.5

 

cox2-nad4L

11

200–201

129–130

1

1

1

3

2.3

1 tRNA excluded

nad5-cob

11

183

183

2

3

0

5

2.7

 

cob-cox1

11

529–536

457–464

1

4

9

14

3.0

1 tRNA excluded

cox1-nad1

11

866–879

795–808

3

6

21

30

3.7

1 tRNA excluded

nad1-nad4

11

242

242

0

5

0

5

2.1

 

nad4-atp8

11

67

67

0

0

0

0

0.0

 

atp8-atp6

11

80

80

0

0

0

0

0.0

 

atp6-rns

11

356–358

356–358

0

0

3

3

0.8

 

large rns-cox3 IR b

9

1343

963

0

1

0

1

0.1

5 tRNAs excluded

small rns-cox3 IR b

2

650–661

270–281

0

5

11

16

5.8

5 tRNAs excluded

cox3-nad6

11

436–457

293–314

5

6

21

32

10.5

2 tRNAs excluded

nad6-rnl

11

551

178

0

5

0

5

2.8

5 tRNAs excluded

Total

 

5713–6415

3713–4415

26

41

93

160

3.6–4.3

27 tRNAs excluded

  1. aIntergenic regions are named by adjacent protein-encoding genes and/or ribosomal genes. tRNAs present in some of these fragments were excluded during calculation as noted in this table.
  2. bFor the large rns-cox3 IR and the small rns-cox3 IR, identical five tRNAs were excluded. Therefore, the total number of tRNAs was still 27.
  3. c“Remaining length” represents the length after excluding tRNAs. % was calculated based on remaining length.
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