Figure 5: Concordance of SNP marker positions on reference sequence with those on genetic linkage map.

The x-axis represents the physical position (Mb) of markers, the y-axis represents the genetic positions of markers on the linkage map (cM). Dark blue dots represent unique markers from previously mapped scaffolds; orange dots represent markers from previously unmapped genome or transcriptome sequences; markers in light blue circles were duplicated markers from previously mapped scaffolds.