Table 3 Annotation of assembly.

From: De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters

Annotation Step

Purpose

Number of transcripts

RNAMMER

Identify rRNA transcripts

44

PFAM

Identify protein domains

103,916

SignalP

Predict signal peptides

29,004

tmHMM

Predict transmembrane regions

36,978

  1. Number of transcripts represented in each step of the annotation process.
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