Table 2 Categorization and abundance of sRNA reads from CHS, CHR and ZZ.
Data Processing/Strain | Reads all | Reads unique | ||||
|---|---|---|---|---|---|---|
CHS | CHR | ZZ | CHS | CHR | ZZ | |
Raw reads | 45297627 | 47566639 | 40906561 | 5066237 | 5421221 | 4643140 |
Clean reads | 31952995 | 33561726 | 29468332 | 4076241 | 4431220 | 3484682 |
Mapped to P. xylostella miRNAs reported by Etebari et al. or Liang et al. in 201322 | 1400099 (4.38%) | 1448802 (4.31%) | 621992 (2.20%) | 1595 (0.04%) | 1602 (0.03%) | 1350 (0.04%) |
Mapped to other RNAs (RFam: rRNA, tRNA, snRNA, snoRNA and others) | 7781970 (24.35%) | 7883299 (23.49%) | 7968865 (27.04%) | 314018 (7.70%) | 313629 (7.08%) | 311243 (8.93%) |
Mapped to known P. xylostella genes | 1427410 (4.47%) | 1199346 (3.57%) | 552586 (1.88%) | 483528 (11.86%) | 434144 (9.80%) | 222222 (6.38%) |
Mapped to Repbase | 542288 (1.70%) | 504062 (1.50%) | 501382 (1.70%) | 23230 (0.57%) | 20743 (0.47%) | 20311 (0.58%) |
Unannotated Sequences | 20801228 (65.10%) | 22526217 (67.12%) | 19823507 (67.27%) | 3253872 (79.83%) | 3661102 (82.62%) | 2929556 (84.07%) |
