Table 2 Counts of the HLA region genotyped and imputed SNPs.

From: Fine mapping genetic associations between the HLA region and extremely high intelligence

 

MAF > 0.0

MAF > 0.005

MAF > 0.01

MAF > 0.05

Genotyped

2,229

2,140

2,121

1,967

Imputed

All variants

8,962

6,705

6,532

5,685

rs and 1 kg SNPs

4,797

4,789

4,713

4,158

Classical alleles

3,363

1,130

1,056

816

Amino acid

802

786

763

711

  1. SNPs are filtered on imputation r2 = 0.90, imputed variants include genotyped SNPs.
Back to article page