Table 1 Number of SNPs, haplotypes and haplotype blocks on each chromosome in the A and B genomes of common wheat.
Chr. | SNP | HapB | Hap | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Total SNPs | SNPs in HapB (%) | Range | Tag SNPs (%) | Range | Total HapBs | Mean (cM) | Range (cM) | Total Haps | Mean | Range | |
1A | 419 | 392 (93.6) | 2–49 | 187 (44.6) | 1–6 | 65 | 1.01 | 0–9.42 | 290 | 4.46 | 2–9 |
1B | 295 | 275 (93.2) | 2–20 | 177 (60.0) | 1–8 | 69 | 0.69 | 0–5.31 | 284 | 4.12 | 2–11 |
2A | 304 | 281 (92.4) | 2–34 | 134 (44.1) | 1–9 | 52 | 1.29 | 0–10.72 | 220 | 4.23 | 2–13 |
2B | 529 | 491 (92.8) | 2–37 | 261 (49.3) | 1–12 | 96 | 1.12 | 0–8.71 | 410 | 4.27 | 2–25 |
3A | 340 | 320 (94.1) | 2–23 | 162 (47.6) | 1–11 | 53 | 1.35 | 0–12.08 | 232 | 4.38 | 2–12 |
3B | 373 | 328 (87.9) | 2–24 | 209 (56.0) | 0–8 | 79 | 0.69 | 0–5.86 | 332 | 4.20 | 1–10 |
4A | 315 | 287 (91.1) | 2–48 | 117 (37.1) | 1–7 | 43 | 1.84 | 0–11.45 | 168 | 3.91 | 2–9 |
4B | 140 | 125 (89.3) | 2–10 | 81 (57.9) | 1–5 | 29 | 1.52 | 0–13.61 | 126 | 4.34 | 2–8 |
5A | 357 | 330 (92.4) | 2–27 | 171 (47.9) | 1–8 | 65 | 1.10 | 0–6.06 | 277 | 4.26 | 2–14 |
5B | 472 | 441 (93.4) | 2–35 | 215 (45.6) | 1–7 | 77 | 1.20 | 0–10.24 | 335 | 4.35 | 2–8 |
6A | 342 | 331 (96.8) | 2–56 | 132 (38.6) | 1–7 | 47 | 1.86 | 0–10.64 | 212 | 4.51 | 2–11 |
6B | 351 | 314 (89.5) | 2–52 | 185 (52.7) | 1–9 | 70 | 0.77 | 0–6.24 | 279 | 3.99 | 2–13 |
7A | 343 | 319 (93.0) | 2–16 | 182 (53.1) | 1–5 | 81 | 0.72 | 0–7.39 | 290 | 3.58 | 2–7 |
7B | 236 | 214 (90.7) | 2–11 | 134 (56.8) | 1–5 | 52 | 1.06 | 0–8.09 | 216 | 4.15 | 2–9 |
Total/Mean | 4816 | 4448 (92.4) | 2347 (48.7) | 878 | 1.16 | 3671 | 4.18 | ||||
Range | 140–529 | 125–491 | 2–56 | 81–261 | 0–12 | 29–96 | 0.69–1.86 | 0–13.61 | 126–410 | 3.58–4.51 | 1–25 |
