Table 1 Sequencing data analysis and relatedness coefficient results.
Individual | TK | E81 | E82 |
|---|---|---|---|
Total reads | 9168617 | 4817884 | 6081215 |
Trimmed reads | 6603060 | 1805684 | 2335337 |
Aligned reads | 2359538 | 3855705 | 4758208 |
Endogenous (%) | 25.73 | 80.03 | 78.24 |
GC content (%) | 37 | 40 | 40 |
Average bp size (stdv) | 54.01 (+/−11.57) | 64.48 (+/−1.52) | 64.48 (+/−1.45) |
MapDamage 5′ | 3' | 0.14 | 0.10 | N/A | N/A | N/A | N/A |
Molecular sex | Male | Female | Female |
Coverage | 0.04X | 0.08X | 0.1X |
SNPs * ¹ | 17403 | 34195 | 42066 |
SNPs with coverage > 1 | 476 | 1796 | 2686 |
Common SNPs | E81-1328/E82-1592 | TK-1328/E82-3480 | TK-1592/E81−3480 |
mt Haplogroup (score) | α1 *2 (0.77) | β5γ2 *2 (0.61) | β5γ2 *2 (0.61) |
Relatedness coefficients | E81-0.1336/E82-0.1236 | TK-0.1336/E82-0.2794 | TK-0.11236/E81-0.2794 |
