Table 2 Comparison of mitochondrial and rRNA genes within Longidoridae.

Protein genes	Xiphinema americanum			Xiphinema rivesi			Xiphinema pachtaicum			Paralongidorus litoralis			Longidorus vineacola
Protein genes	AA	Predicted initiation and termination codons		AA	Predicted initiation and termination codons		AA	Predicted initiation and termination codons		AA	Predicted initiation and termination codons		AA	Predicted initiation and termination codons
cox1	518	ATA ^** , ^b	T(AA)	515	ATA ^** , ^b	T(AA) ^* , ^a	513	ATA ^* , ^a	TAG	512	ATA	TAA	515	ATA	TAA ^* , ^b
cox2	206	ATA	TA(A) ^** , ^a	206	ATA	TA(A) ^** , ^a	186	ATA	TA(A) ^** , ^a	207	ATA	TAA ^* , ^a	200	ATA ^** , ^a	TA(A) ^* , ^a
cox3	249	ATA	TAA ^** , ^b	249	ATA	TAG ^** , ^b	256	ATA	TAG ^** , ^a	241	ATA	TAA	258	ATA	TA(A) ^** , ^a
nad1	198	ATA ^** , ^b	TAA	289	ATA ^** , ^b	TAA	276	ATA	TA(A) ^* , ^a	305	ATA	TAG ^* , ^a	292	ATA	T(AA) ^* , ^a
nad2	278	ATA ^** , ^a	T	280	ATA ^** , ^a	TAA ^* , ^a	280	ATA ^** , ^a	TAA ^* , ^a	280	ATA	TAA	273	ATA	TAA ^* , ^a
nad3	106	ATA	T(AG)	106	ATA	TAG ^* , ^a	112	ATA	TAA	109	ATA	TAG	111	ATA	TAA
nad4	391	ATA ^* , ^a	TAA	391	ATA	TAA	388	ATA ^** , ^a	TAG ^* , ^a	364	ATA	TAA ^* , ^b	387	ATA	TAA
nad4L	91	ATA	TAA	89	ATA ^* , ^b	TAA	73	ATA	TAG	90	ATA ^* , ^b	TAA	84	ATA	TAA
nad5	515	ATA	TAA	518	ATA ^* , ^a	TAA	497	ATA	TAA ^b	504	ATA	TAA	512	ATA ^* , ^a	TAA
nad6	146	ATA	TAA ^** , ^b	146	ATA	TAA ^** , ^b	144	ATA	TAG ^* , ^b	142	ATA	TAA	146	ATA	TA(A) ^* , ^a
cob	366	ATA	TAA ^* , ^a	366	ATA	TAA ^* , ^b	367	ATA	TAG ^* , ^b	365	ATA	T(AA) ^* , ^a	366	ATA	TAA
atp6	205	ATA	T(AA)	205	ATA	TA(A) ^* , ^a	203	ATA	TAA ^* , ^a	203	ATA ^* , ^b	TAA	205	ATA ^* , ^b	TAA
atp8	NF	NA	NA	NF	NA	NA	NF	NA	NA	NF	NA	NA	NF	NA	NA
rRNA genes
rrnL	729				724		707			720			722
rrnS	569				571		531			606			546

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